RNA id: AMCG00021003


Basic Information

Item Value
RNA id AMCG00021003
length 663
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00021003
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41000180 ~ 41004194 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCTTGAGAAGAATGAGGGCCTGCTAACCAAAGACTACACTGAGACCCATTATACAGATGATGGTCAGAAGATGACAACAGCTCCTGCAGATCTGGATCACTGTTACTATCATGGGCACATACAGAATGACAGCGACTCTGCGGTTAGCATCAGCACCTGCGATGGACTGAGGGGCTATTTTAAGACTGCTGGACAGCAGTATCTGATAGAGCCCCTGTCCAAGGATGACACTGGTGACCACGCTGTGGTGAAGTATGAGAGTGTGGAGCAGGGGCCTGCTGTCTGTGGAGTCACCAACACCACCTGGGATGAAGACTACCCTGTTGTCAGTAAAGTGGGTTCCAGAACATCGGGGCCATCTCTCATGAAACAGGATAAATATATGGAGCTGTACTTGGTTGCTGATAACAGAGAGTACGTGAAAATGAGGCGCAATCTGAACGATTTGAGAAAGAGGGTGTTTGAAATCATTAACTTCTCCAACATGGTGTACAGGCCTCTGAAGACATTCCTAGCACTTACTGGACTGGAAGTTTGGACAGACCAGGACAAGTTTGTGGTGGAGGCTGCTGCTGGAAATACCTTGGGCAAATTCACAGATTGGGGCAAGGCCAACCTTCAGGACAAGAGGCATGACAATGCGCAACTCCTAACGTAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84007 lncRNA downstream 96063 40841103 ~ 40904117 (-) True G67246
TU84013 lncRNA downstream 97849 40901390 ~ 40902331 (-) True G67252
TU83939 lncRNA downstream 425324 40573021 ~ 40574856 (-) True G67183
TU83937 lncRNA downstream 428184 40570327 ~ 40571996 (-) True G67181
TU83930 lncRNA downstream 439050 40559091 ~ 40561130 (-) False AMCG00020997
TU84038 lncRNA upstream 34614 41038808 ~ 41039096 (-) True G67273
TU84042 lncRNA upstream 47290 41051484 ~ 41052538 (-) True G67277
TU84052 lncRNA upstream 98525 41102719 ~ 41103224 (-) True G67283
TU84067 lncRNA upstream 251975 41256169 ~ 41264469 (-) True G67298
TU84107 lncRNA upstream 455269 41459463 ~ 41469248 (-) True G67334
AMCG00021004 mRNA downstream 522 40997807 ~ 40999658 (-) True AMCG00021004
AMCG00020998 mRNA downstream 270554 40661926 ~ 40729626 (-) True AMCG00020998
AMCG00020997 mRNA downstream 359841 40557130 ~ 40640339 (-) True AMCG00020997
AMCG00020992 mRNA downstream 469570 40530158 ~ 40530610 (-) True AMCG00020992
AMCG00020991 mRNA downstream 541717 40454892 ~ 40458463 (-) True AMCG00020991
AMCG00021006 mRNA upstream 88675 41092869 ~ 41142694 (-) True AMCG00021006
AMCG00021008 mRNA upstream 362530 41366724 ~ 41367357 (-) True AMCG00021008
AMCG00021012 mRNA upstream 592458 41596652 ~ 41602153 (-) True AMCG00021012
AMCG00021026 mRNA upstream 669415 41673609 ~ 41687703 (-) True AMCG00021026
AMCG00021027 mRNA upstream 970665 41974859 ~ 41975161 (-) True AMCG00021027
TU83728 other downstream 1895313 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 3367604 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 3932388 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 3954241 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 5013484 35975764 ~ 35986696 (-) False AMCG00020900
TU84154 other upstream 596207 41600401 ~ 41602270 (-) False AMCG00021012

Expression Profile