RNA id: AMCG00021007


Basic Information

Item Value
RNA id AMCG00021007
length 1369
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00021007
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41091233 ~ 41115596 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGCATCTGCTCTCCAGGAAGAGACAAGCGAGGTGACAGTAATTTCAGACAACGTGTACATTTTCAGCTTCCATGCATTTCCTCCTAAATATGCGGCTGGTACTTATTATGCTGGTGGTTGTATGGCTGTGCTATACACAGGGTAAACCTGTTACtagtaataaagtaaatacacaacAGCTTGAAGATCCAACTCCTGACACACAAAACGACTTCAGAAATGGCCAGATAACACAAGTACATAGCAAAAGTCAGCAAAGTCAAGATTTGGAAAACtatgataaaacacaaaatagctCACTGAAAACACAAGTCAAGAAAATGACTGGAGAAGATGAGGATGGCAAAAACAAACCTTTGTCAAAACAGCAGGAAAGTTCAAATGCTGGGCAGGATAAAACCACAACTGTAAAGAAGCCAACCATGACCGATAATCAGGACCGTGGGAATCCCCAACAAGGGAAATTGCCTATGAATGAACCTGTAAAATCAAACTCAGCAAATCAGCAAGATgaatatagtacagtacatttcCAGCAAATTGCAAACCACAGGGATGAATATAAATCTACATTAGGCAGGAATGAAACGGGAAGAGAAAATGCTCATGTGTCTGAACCCTCAGATGACGTGAAATCTATAGCAATTTTCAGTACAACAGAGCAACACAACCAACACCCCAACCCAAGTGCAGATGCTGCTGAGGCCACTGCAACTACCAATGTCCAGGGAAGTCCAGGAAGTGGGCAGTTGGTAGGCAAGATGAAGGACAAGGAACATGAACCAGAGACTTCCAAGGACAAGACTGAGGAAGACCAGGAAAACCAGGACCAGCAATTTCAGGATAATggggaagagaaagaggaagaaaaaaaggttgGGCTTCCAGAGACTAAGGATGgtgacaatgatgatgatgatgatgatgatgatgatgatgatgatgatgacaactCTGATCCTGATAATAaggatacaaaacaaatacaattagacATTCCCCAGCAACCTCAACTACCCAAGCAGGACCTGCCCAAAGATGACCCTGAGAGCAGCCACTTCTTTGCCTACCTGGTTTCAGCTGCTGTACTGGTAGCAGTACTGTACATAGGCAACCATAACAAGAGGAAGCCATGTCCCCCTCGCCCCCGGCATCCCTTCCAACTACGCTGGCTGCACCAGGCCCAGTTGCACCCCAGGTCAATAGCTTTCTTCCACAGGGTGACCACGCTCATTTGTCTGGCTGGGGGCCCACACCTCAAGAATGCTGGGGTGCAAGCCCAGATCTCCAGAACCCCCACTGCCATCGTGAGACAGGTGTGGGCAGCTAACCAGGAAGGCAAGGAGAAGCTTCAGCACTGCGGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84037 lncRNA upstream 52137 41038854 ~ 41039096 (+) True G67272
TU83981 lncRNA upstream 125321 40950099 ~ 40965912 (+) True G67221
TU83965 lncRNA upstream 299762 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA upstream 299762 40786685 ~ 40791471 (+) False G67207
TU83938 lncRNA upstream 516377 40573554 ~ 40574856 (+) True G67182
TU84078 lncRNA downstream 188591 41304187 ~ 41305221 (+) True G67309
TU84079 lncRNA downstream 216670 41332266 ~ 41397674 (+) True G67310
TU84093 lncRNA downstream 392011 41507607 ~ 41508101 (+) True G67322
TU84155 lncRNA downstream 503699 41619295 ~ 41619609 (+) True G67371
TU84182 lncRNA downstream 621651 41737247 ~ 41854669 (+) True G67393
AMCG00021005 mRNA upstream 28706 41051545 ~ 41062527 (+) False AMCG00021005
AMCG00021001 mRNA upstream 151667 40924447 ~ 40939566 (+) True AMCG00021001
AMCG00021002 mRNA upstream 178086 40910435 ~ 40913147 (+) True AMCG00021002
AMCG00021000 mRNA upstream 252460 40822569 ~ 40838773 (+) True AMCG00021000
AMCG00020999 mRNA upstream 292125 40758497 ~ 40799108 (+) True AMCG00020999
AMCG00021010 mRNA downstream 95835 41211431 ~ 41212049 (+) True AMCG00021010
AMCG00021011 mRNA downstream 169338 41284934 ~ 41299165 (+) True AMCG00021011
AMCG00021014 mRNA downstream 253031 41368627 ~ 41370418 (+) True AMCG00021014
AMCG00021016 mRNA downstream 343881 41459477 ~ 41518845 (+) True AMCG00021016
AMCG00021009 mRNA downstream 462788 41578384 ~ 41589019 (+) True AMCG00021009
TU84041 other upstream 38675 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 769412 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 4173797 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 4834722 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 5182831 35867393 ~ 35908402 (+) True G66362
TU84094 other downstream 482627 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 937334 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 1310515 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile