RNA id: AMCG00021009


Basic Information

Item Value
RNA id AMCG00021009
length 2838
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00021009
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41578384 ~ 41589019 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGGACAGTAGTGAGATGGAAGTTTGTGATTCTACGGAAGGAGGTGATGAACAGAGCACAGCCAGTCTCTTAGAGGTGGAGGAGAAGAACTTTATGACCACTTTGTATAAATTTATGAAGGAGAGGAACACACCCATCGAAAGGATACCACACCTGGGCTTCAAGCAGATTAACCTCTGGAAAATATACAAAGCTGTGGAAAAGCTGGGAGGATATGACTCCGTGACGGCTCGGCGACTGTGGAAAAATGTGTATGATGAACTAGGGGGCAGCCCGGGGAGCACAAGTGCTGCCACTTGCACTCGCCGCCACTATGAAAGGCTGGTACTGCCCTTTGAGAGACACCTCAGAGGAGAGGAAGACAAACCCCTGCCCCCTGCCAAACCACGCAAACAGTACAAAACAGGCAAGGATTGCAAGGGCAAAAAGGCTGAGTGCAAAAGGAAGAAGAATGAAATGGACAAGGAAGGGGAAGTAGGCAGTGGCCTAGAgGACAAGAAGCAGGTTGGTAGCAGGTATGAAACTGGAACATGCTTACATACTGGCCATAGGTTGACACCATCTGACAACCCCAAACCAGATCTCCCTTGTCATGATGTATCGGAACAAGAGAGGGATGCCTGCCCTGCAAAGGAATGTGCTGTAAGAGTATTGGCCCCTGGGAACCATTCTGCTACCATCTGCCCAGCCTCCCACCAGATAAAAAACCTGCTTTCCAGTTATCACTCCACAGGGAGGGGAGTTATTTCTCCATTAGTAAAGAAGAAGCTGATTGCCCAGGCCAGTGAGGCAGGGAGTTTGAGTTTCTCTGCAATAGTTGCAGCTTCATGCCCTGAGCCCTGCCCCAGCCCAGATGAGGATTCCAAAGACAGGCCCTCTGTCATCCACTGTGCTCAGGTCCCAGAACTCCAGGCCGTGCTGCCTTCCCGCAGTGACTCATCTGAGGGGTCCCCTGAGCCCCCTTCcacttcttcctcctctccaaGCCCCTCTGCCTGCTCCATCACCTCTGAGGACTGCCTGTCACAACCAGAAGACTATGTGATCACTCCAGAACTTGAGAGATCTGGTTTCTCATCCATCCCCTCCATGAAGCCCCTCAACTGCTACCCAACTGCTAAGGAATCGAACAGCTACTCCCGTGGACCCAGGGGGCTTCTTCAAGTCAGCCCACTTCGGAGCGACACCACCAGGGCCAAGGGGCAGCAGCCTGACCTGTCATGGAGCCCAGGCTGCAAAATGGAGGAAGGACAGTCCACTCTCAAATCTCAGCATCCACTGTCCTCTGCCTCAACCACTTTAGGACCAAAAGCTTGCTGGGTTCCACCAATTCCTTCAAGTTTCAATAAGGTGCTGCCAAAAACCTCCTTTCTACAGAGCTACAAGCTTCCCCATGCCCTGAAGCGGCCAGCCCCAGAGGATGCTGCATATGGGAAGAAATTTCAAATGGTGCCCCCACTCCCCCAAGGAGAACcgaaggagaaaaacaaacctggGTTGCCCAAGCCTGTGGCCACTCACTCACTAATGCACCACCAAGGCAACTTTCCTGTTTCCTACTTTCTCCCAGCCTATGACAGAACTCGAACACCCTCTGCCAATCAGTTGAAAGGCCTTCACTCTCACTTCCTCAACTCCCTGCCAGCCCAACTGGCATTGCCTACCTCCCATGCACATCCTGACCTGATGTACCGCCAGCTCTCTGCAGGAGGTGCCTATCCTGTCCTATATGACTCTACCACCCGCACCCGGCATTATCCCTTCCCCATCTGGCACCCCCAAGCTGGGTATGCATTTGCTCGCTTGCAGCCCTTATACCCCAACACTAAACTGTGACACCCTGTGCCACCTTCATGAGCAATACAGCCCCACCCTGCAACTAAGaatggtattttgtttttaaatccaccTTAACTGTACGAAATGGGGAAAATTGTCATATCTAAtggccaagaaaaaaatattttaatgtgctgGAAATCTAATTGtctaaatgaattaaatagaCTTAACTACAAAGAAGATCAGAAACATTCTGTTGTTCCTGTGGTGGATTGCAGGAATCTGTCTGAACGTGCATGGACTGAAAAAGAAGCAATAAGTTgcctaataataataggatAGCAGAATTGGACAGAACCAAATACCTCATTAAACCACTCAGTATTAAATATTCAGGAAccttatgttttatgttatttgcTGTTTGTTGGTATGATTTGGTATAATATGATGTAATTTTCTGGTGGCATAATATACCAAAGTACAGCTCCCCTGTTAACTGTTCTGTcctaataatattaaatgcagtATATTTACCTTGTATGTATTCTGTGGATAAGGCGCAATATTGAGAAATAATTTGAGAAAAATTACTATGGTCAGCAAGTaaacaaagtgttttattttttttctaaaggaGTTGAATatactatttttaattatggaGATATTTGTATTGACTGGACTTATCAAACATGTActgtttaatgttaaatgtttatacTAGGTAATCACAATATGATCAAGATTATTTGTCCATTTAGCACTGTACATACCCTGACTCTTGAATACATAAATTGTAAAAAGCAATTCTTCGTTTTCCACTCTGTAATATCAATTTAGTTACGACACTGTAAACGGTTAATTTTCCAATATGGTCAGTACATTGTGCACTCCCCACTGTTACACTACATCAGACATTTCGTCCACAATTCACTTTGGGcaatgaaatgtatgtttttctgaGTTGTTTTCTTacactttaattatattgtttcatATATTGGGATATGTGTTACTTGTGTATTGGCTACAGCATGCAAAATTGTTCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84093 lncRNA upstream 70283 41507607 ~ 41508101 (+) True G67322
TU84079 lncRNA upstream 180710 41332266 ~ 41397674 (+) True G67310
TU84078 lncRNA upstream 273163 41304187 ~ 41305221 (+) True G67309
TU84037 lncRNA upstream 539288 41038854 ~ 41039096 (+) True G67272
TU83981 lncRNA upstream 612472 40950099 ~ 40965912 (+) True G67221
TU84155 lncRNA downstream 30276 41619295 ~ 41619609 (+) True G67371
TU84182 lncRNA downstream 148228 41737247 ~ 41854669 (+) True G67393
TU84188 lncRNA downstream 301652 41890671 ~ 41893979 (+) True G67398
TU84197 lncRNA downstream 395592 41984611 ~ 41985031 (+) True G67405
TU84275 lncRNA downstream 560540 42149559 ~ 42149967 (+) True G67479
AMCG00021016 mRNA upstream 59539 41459477 ~ 41518845 (+) True AMCG00021016
AMCG00021014 mRNA upstream 207966 41368627 ~ 41370418 (+) True AMCG00021014
AMCG00021011 mRNA upstream 279219 41284934 ~ 41299165 (+) True AMCG00021011
AMCG00021010 mRNA upstream 366335 41211431 ~ 41212049 (+) True AMCG00021010
AMCG00021007 mRNA upstream 462788 41091233 ~ 41115596 (+) True AMCG00021007
AMCG00021013 mRNA downstream 41660 41630679 ~ 41631432 (+) True AMCG00021013
AMCG00021015 mRNA downstream 68651 41657670 ~ 41658791 (+) True AMCG00021015
AMCG00021021 mRNA downstream 111846 41700865 ~ 41709287 (+) True AMCG00021021
AMCG00021020 mRNA downstream 120459 41709478 ~ 41710229 (+) True AMCG00021020
AMCG00021022 mRNA downstream 122902 41711921 ~ 41740137 (+) True AMCG00021022
TU84041 other upstream 525826 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 1256563 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 4660948 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 5321873 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 5669982 35867393 ~ 35908402 (+) True G66362
TU84094 other downstream 9204 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 463911 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 837092 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile