RNA id: AMCG00021011



Basic Information


Item Value
RNA id AMCG00021011
length 1044
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00021011
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41284934 ~ 41299165 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCCCCAGGACACCCCATCCTTCAGAGCTCTCGCCCTACTACCCCCTTTCTCCTGGAGCTGTTGGACAGATCCCCCATCCACTGGGATGGCTGGTGCCACAACAGGGCCAACCCATGTACTCAATACCTCCAGGTGGGTTCAGACACCCCTATCCGGCTCTGGCAATGAATGCATCCATGTCAAGCTTGGTGTCCAGTCGTTTTTCACCACACATGGTGCCCCATCCCTCTCACAGCCTACACCAGACTGGCATCCCCCATCCTGCCATTGTGAAATCGCCAGGACCAGTGAAGAAAGAGGAGGACAAGAAGCCACACATCAAGAAACCGCTCAATGCCTTCATGCTGTACATGAAGGAGATGAGAGCCAAAGTGGTGGCCGAGTGCACCCTCAAAGAGAGTGCGGCCATCAACCAGATCCTTGGCAGAAGGtggcatTCTCTGTCAAGAGAAGAACAGGCCAAATACTATGAACTGGCACGTAAAGAGAGGCAACTTCACTCCCAGCTCTACCCTGGCTGGTCGGCACGAGATAATTATGGAAAGCGgaaaaagaggaagagagattgCAAACCGCAAGACACAACACCAGAAGACAACTACTCGTCACGGAACAAGAAGCAGTGCGTGCAATATCTGCCACCGGAGAAAATGTGTGATAGCCCATCGTCATCGCATGGCAGCATGCTGGACTCCCCTGCCACCCCGTCGGCCGCTTTAGCGTCTCCTGCAGCTCCAGCGGCAACTCATTCCGAGCAAGCACAGCCCCTGTCGCTCACCACCAAGCCTGAAGGACGGTCACACCACCACTTTCCGGTCTCTGGCAAGCCAACTggctctacttcctcttccacCCAGCCTAGTATCTCCCTGCCTATTGGCTCCCCAGGCAGTCAATCACCCCTTCTCTCCCGGCCAATCCCCTTCACCTCCCTTCATCCTTCCATGCTGAGCCCACCCTCTTCTTTCCACCAGGCAGCCCTGCATTCCCATCATGCTTTACTCCAATCCCAGCCCCTCTCCTTGGTAACCAAATCaactgaa

Function


GO: NA

KEGG:

id description
K04490 TCF7L1; transcription factor 7-like 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84037 lncRNA upstream 245838 41038854 ~ 41039096 (+) True G67272
TU83981 lncRNA upstream 319022 40950099 ~ 40965912 (+) True G67221
TU83965 lncRNA upstream 493463 40785761 ~ 40791471 (+) True G67207
TU83966 lncRNA upstream 493463 40786685 ~ 40791471 (+) False G67207
TU83938 lncRNA upstream 710078 40573554 ~ 40574856 (+) True G67182
TU84078 lncRNA downstream 5022 41304187 ~ 41305221 (+) True G67309
TU84079 lncRNA downstream 33101 41332266 ~ 41397674 (+) True G67310
TU84093 lncRNA downstream 208442 41507607 ~ 41508101 (+) True G67322
TU84155 lncRNA downstream 320130 41619295 ~ 41619609 (+) True G67371
TU84182 lncRNA downstream 438082 41737247 ~ 41854669 (+) True G67393
AMCG00021010 mRNA upstream 72885 41211431 ~ 41212049 (+) True AMCG00021010
AMCG00021007 mRNA upstream 169338 41091233 ~ 41115596 (+) True AMCG00021007
AMCG00021005 mRNA upstream 222407 41051545 ~ 41062527 (+) False AMCG00021005
AMCG00021001 mRNA upstream 345368 40924447 ~ 40939566 (+) True AMCG00021001
AMCG00021002 mRNA upstream 371787 40910435 ~ 40913147 (+) True AMCG00021002
AMCG00021014 mRNA downstream 69462 41368627 ~ 41370418 (+) True AMCG00021014
AMCG00021016 mRNA downstream 160312 41459477 ~ 41518845 (+) True AMCG00021016
AMCG00021009 mRNA downstream 279219 41578384 ~ 41589019 (+) True AMCG00021009
AMCG00021013 mRNA downstream 331514 41630679 ~ 41631432 (+) True AMCG00021013
AMCG00021015 mRNA downstream 358505 41657670 ~ 41658791 (+) True AMCG00021015
TU84041 other upstream 232376 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 963113 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 4367498 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 5028423 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 5376532 35867393 ~ 35908402 (+) True G66362
TU84094 other downstream 299058 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 753765 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 1126946 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile