RNA id: TU84154


Basic Information

Item Value
RNA id TU84154
length 371
RNA type TUCP
GC content 0.53
exon number 4
gene id AMCG00021012
representative False

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41596080 ~ 41602270 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACATATCTTTCTCACACAGCGCtcgtttgttgttttgaagccgcGCTGCAACAGCGCAGTACCTTTTGAGCAGCTGCGCGGCTGTGNNNNNNNNNNAGCCTGTGGATGCGTCGCATTGTGACGTCTTTTCCGGTTGAGTTCATGCAAACGGAGCTTGTAGGAGAAGAGATGGCTGCAAGGTTACTTATGAGATCGGCCGTTCGTGCCGCGAGTAGCTGCCGGGCAGCGCCGGTACTAGCCCTCACCCGTGGCATGTCGGCGGGAGgcATCCCAACTGACGAAGAACAAGCCACGGGTTTGGAGAAGAAAATCATGAACGCGATGAAAGCGGGCACGGACCCCTTTAGTGTGTTTAAACCAAAGCAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84151 lncRNA downstream 2878 41596080 ~ 41597523 (-) False AMCG00021012
TU84148 lncRNA downstream 7672 41592521 ~ 41592729 (-) True G67368
TU84135 lncRNA downstream 30110 41550415 ~ 41570291 (-) True G67360
TU84133 lncRNA downstream 79904 41518717 ~ 41520497 (-) True G67358
TU84127 lncRNA downstream 92308 41507719 ~ 41508093 (-) True G67352
TU84234 lncRNA upstream 288768 41891038 ~ 41893984 (-) True G67440
TU84258 lncRNA upstream 473053 42075323 ~ 42075754 (-) True G67462
TU84276 lncRNA upstream 547323 42149593 ~ 42149966 (-) True G67480
TU84322 lncRNA upstream 801551 42403821 ~ 42404270 (-) True G67522
TU84334 lncRNA upstream 881315 42483585 ~ 42484218 (-) True G67534
AMCG00021008 mRNA downstream 233044 41366724 ~ 41367357 (-) True AMCG00021008
AMCG00021006 mRNA downstream 457707 41092869 ~ 41142694 (-) True AMCG00021006
AMCG00021003 mRNA downstream 596207 41000180 ~ 41004194 (-) True AMCG00021003
AMCG00021004 mRNA downstream 600743 40997807 ~ 40999658 (-) True AMCG00021004
AMCG00020998 mRNA downstream 870775 40661926 ~ 40729626 (-) True AMCG00020998
AMCG00021026 mRNA upstream 71339 41673609 ~ 41687703 (-) True AMCG00021026
AMCG00021027 mRNA upstream 372589 41974859 ~ 41975161 (-) True AMCG00021027
AMCG00021028 mRNA upstream 398379 42000649 ~ 42117898 (-) True AMCG00021028
AMCG00021031 mRNA upstream 634971 42237241 ~ 42238378 (-) True AMCG00021031
AMCG00021032 mRNA upstream 643727 42245997 ~ 42269261 (-) True AMCG00021032
TU83728 other downstream 2495534 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 3967825 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 4532609 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 4554462 37040447 ~ 37045939 (-) False AMCG00020923
TU83060 other downstream 5613705 35975764 ~ 35986696 (-) False AMCG00020900

Expression Profile