RNA id: AMCG00021016



Basic Information


Item Value
RNA id AMCG00021016
length 1041
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00021016
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41459477 ~ 41518845 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTGGAGGAGTTGAGCAGTGGGAAGGTGATGTATGCATTCTGTCGTGTGCAGGACCCCAACTCTGGACTCCCCAAATATGTCCTTATCAACTGGGGGGCCCATGTGACAGTCAATGCTCGTGCGGAGGAGGATGTGGAGCCTGAGGTCATCATGCAGAAAGTGGCCAAAGCATCAGGTGCCAACTACAGTTTCCATAAGGAATCTAATCGCTTCCGAGACTCGGGACCACAGGGACCAGTGggATCGGTGTATCAGAAGACCAATGCAATGTCTGAAATTAAAAGGACCAACAAGGATAATTTCTGGGCCCAGGCTGAGAAAGATGAAGAGAAGCGGCGGCAGGAAGAGCGTCTAaaggtggaggaggagaggcaGCGTTTGGATCAAGAGAGGAAGGCAAGAGAATCTCTGGAGgcaacagaaagagagaagcGAGACAAGGAAAGGGCTAGCCAGATTGATCAGCAGAAGAAGAACCAGCAGAAGCAGGATACTCAGGACAGAGACCAGGAGAAACAGCAGTGGGAAGACCAGGAGAGGGAGCACCAGGCTGTCCAGAGGAAGGGCTTCAAACGCAGTGAATCAGTGGAGAAAGCCAATGAAGCTGCTTCTGTCATCTCCCAGCGCTCAGTGAACCCTAGGGACATATTCAAGCAGAGAGAGCGAGGTACGCCTAAGGACAACAGAGACGTGGCTGTCAACTCACAGCCAGGGCGGTTACATAGTCCCTTTCTGTCAAACCACCCTGGTGAGCCAGAGCACCCCAGCTCTCCCCTGCGCCAAACATCACCTGTGCCCGCCTCGCCTGCCTCTCCTTCCCGCGCCACAGAGCCCACTGTCTTGGAGCAGGCCCGGTCCCATTATGTGGAACCTGAGAAGCCTCCTCAGGATGAATGGCaagCTGATGACACAGAGATTTCTTTCGACCCTGATGACATCATCACTGGGATTGAGATGATTGATGAAGGCTGGTGGCGAGGCTATGGCCCTGATGGAGGGTTTGGGATGTTCCCAGCCAATTACGTGGAACTTCTCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84079 lncRNA upstream 61803 41332266 ~ 41397674 (+) True G67310
TU84078 lncRNA upstream 154256 41304187 ~ 41305221 (+) True G67309
TU84037 lncRNA upstream 420381 41038854 ~ 41039096 (+) True G67272
TU83981 lncRNA upstream 493565 40950099 ~ 40965912 (+) True G67221
TU83965 lncRNA upstream 668006 40785761 ~ 40791471 (+) True G67207
TU84155 lncRNA downstream 100450 41619295 ~ 41619609 (+) True G67371
TU84182 lncRNA downstream 218402 41737247 ~ 41854669 (+) True G67393
TU84188 lncRNA downstream 371826 41890671 ~ 41893979 (+) True G67398
TU84197 lncRNA downstream 465766 41984611 ~ 41985031 (+) True G67405
TU84275 lncRNA downstream 630714 42149559 ~ 42149967 (+) True G67479
AMCG00021014 mRNA upstream 89059 41368627 ~ 41370418 (+) True AMCG00021014
AMCG00021011 mRNA upstream 160312 41284934 ~ 41299165 (+) True AMCG00021011
AMCG00021010 mRNA upstream 247428 41211431 ~ 41212049 (+) True AMCG00021010
AMCG00021007 mRNA upstream 343881 41091233 ~ 41115596 (+) True AMCG00021007
AMCG00021005 mRNA upstream 396950 41051545 ~ 41062527 (+) False AMCG00021005
AMCG00021009 mRNA downstream 59539 41578384 ~ 41589019 (+) True AMCG00021009
AMCG00021013 mRNA downstream 111834 41630679 ~ 41631432 (+) True AMCG00021013
AMCG00021015 mRNA downstream 138825 41657670 ~ 41658791 (+) True AMCG00021015
AMCG00021021 mRNA downstream 182020 41700865 ~ 41709287 (+) True AMCG00021021
AMCG00021020 mRNA downstream 190633 41709478 ~ 41710229 (+) True AMCG00021020
TU84041 other upstream 406919 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 1137656 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 4542041 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 5202966 36254699 ~ 36256511 (+) True G66506
TU82978 other upstream 5551075 35867393 ~ 35908402 (+) True G66362
TU84094 other downstream 79378 41598223 ~ 41602113 (+) True G67323
TU84255 other downstream 534085 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 907266 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile