RNA id: AMCG00021021



Basic Information


Item Value
RNA id AMCG00021021
length 474
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00021021
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41700865 ~ 41709287 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCCGTGCAAACCAGAAGGTCCATATCCAAGAGATAAGAAAGGTAGATGCTTTTCTAAAGAGTTCTACTACAAAACATCTCAAAAAGGAGTTAAGATTCCTCGTAAATGGCTCTGTTACTCACCGAAAATGGACCATAACCGCCACCTGCCACAACCTAGGATGGACTGTTGTAATAAATGACTGGCAGGGCCTTTCACAAAAAGCAAAAGATCACAAGACCTCTCGCTCACTCATGAAAGCTTGTGTAGTGTATGATACATGGAAACAAGACCAAACCATAGACCCGCAAATATTCACTGACTACGAAAAAGAGGTGCAAATACAGAACGAGATCCAGAACACAGAATTCTATTACCTAATTATGAACACAACTCAGGATATCCCGAATGTCGACCAGTTAAGTCAGGTGTTTAGATATGTCACCATTTCcgtaaatgaaaatgaaatagagTTTCCTGGGTTTTCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84155 lncRNA upstream 81256 41619295 ~ 41619609 (+) True G67371
TU84093 lncRNA upstream 192764 41507607 ~ 41508101 (+) True G67322
TU84079 lncRNA upstream 303191 41332266 ~ 41397674 (+) True G67310
TU84078 lncRNA upstream 395644 41304187 ~ 41305221 (+) True G67309
TU84037 lncRNA upstream 661769 41038854 ~ 41039096 (+) True G67272
TU84182 lncRNA downstream 27960 41737247 ~ 41854669 (+) True G67393
TU84188 lncRNA downstream 181384 41890671 ~ 41893979 (+) True G67398
TU84197 lncRNA downstream 275324 41984611 ~ 41985031 (+) True G67405
TU84275 lncRNA downstream 440272 42149559 ~ 42149967 (+) True G67479
TU84316 lncRNA downstream 686438 42395725 ~ 42395996 (+) True G67519
AMCG00021015 mRNA upstream 42074 41657670 ~ 41658791 (+) True AMCG00021015
AMCG00021013 mRNA upstream 69433 41630679 ~ 41631432 (+) True AMCG00021013
AMCG00021009 mRNA upstream 111846 41578384 ~ 41589019 (+) True AMCG00021009
AMCG00021016 mRNA upstream 182020 41459477 ~ 41518845 (+) True AMCG00021016
AMCG00021014 mRNA upstream 330447 41368627 ~ 41370418 (+) True AMCG00021014
AMCG00021020 mRNA downstream 191 41709478 ~ 41710229 (+) True AMCG00021020
AMCG00021022 mRNA downstream 2634 41711921 ~ 41740137 (+) True AMCG00021022
AMCG00021018 mRNA downstream 46218 41755505 ~ 41782847 (+) True AMCG00021018
AMCG00021017 mRNA downstream 131744 41841031 ~ 41861878 (+) True AMCG00021017
AMCG00021019 mRNA downstream 185546 41894833 ~ 41934745 (+) True AMCG00021019
TU84094 other upstream 98752 41598223 ~ 41602113 (+) True G67323
TU84041 other upstream 648307 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 1379044 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 4783429 36914815 ~ 36917436 (+) True G66551
TU83151 other upstream 5444354 36254699 ~ 36256511 (+) True G66506
TU84255 other downstream 343643 42052930 ~ 42053675 (+) True G67459
TU84320 other downstream 716824 42426111 ~ 42465886 (+) True AMCG00021029

Expression Profile