RNA id: AMCG00021028


Basic Information

Item Value
RNA id AMCG00021028
length 969
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00021028
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 42000649 ~ 42117898 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGAGGAAGTCAAGAGGTAGCGGCGCCAGGCTGCAATGCTTGGCTGGGGCCGAGACGACCAGGAAGAGCCAGGAAGAGAGCCTTTATCATCTCCTAATGAGCTCTATCTCTGCAGGATTAGACAGGCTCCTCTGTGACAGTGGGACCTGCTTTGCTAGCCATATTGGGTGCTGCGGGCTCAGTGACTTCCTCTGCCTGGGACACAAGGACAGGGGAGGGCAGGAGAAAGCAGGGGAAGACAGGGAAGAGCAAGAGCTGCCCCAGCTCTCATCCTATTCTCCAGCAGGGTTGGTGGGCTCCCTGCGCAAGCTTGGTTGGATCTTGAACATGTGGGATCCTGGCCAACGCCAACTCCCATGCCCATCAGCCCCAGCTGAAGAGGTGGAGGAGGCAGAAGAGGCAGGGCAGGGCTTGCTCTGCAACAGCTGGAACAGCATAGACATCTCGGGCCCCAGCCTGGACACCAGATTACTCCTGACCACACTCACGCGGTGTCGCGCAGTAGTGACACTGACAGAGACCATCAATTCTGACCAGCAGGTAACAGACGTGATCATATGCACCGCTTCAGGATACCGTTTGgcaaGTGAGTTTCTGACCAGGATGAGGGACTACATGCCTCATTCCCACAAACAGCTGATTGAGGCACTGTCTCGTGGCCCCTCCCTGCGCCAGTATGTCCTAGAAAGTGCTCAGCCAAAACTGATGCAGGCCTTCAACAGCTGTGTGTCCCAACTGCTCTCACTGCGCAACTACCACATCATCATTGTCAGCCGTTTCATCAGTGTGCCAGCCGCCAGAGCCAGGCAGATGCAGGTGCAGGGGGAGCAGTCTGTCCACGCCCCCTTAGCACTAGAGGACAGGGGCACAGGCGGCTCCAGAATCATGAGCTTCCTGAAGACTGTACGAGACCAAACCATAGACAGCTCCATTGCCCCCACCCAACCACTTGACTCTGAGCACTGA

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84234 lncRNA downstream 106665 41891038 ~ 41893984 (-) True G67440
TU84151 lncRNA downstream 403126 41596080 ~ 41597523 (-) False AMCG00021012
TU84148 lncRNA downstream 407920 41592521 ~ 41592729 (-) True G67368
TU84135 lncRNA downstream 430358 41550415 ~ 41570291 (-) True G67360
TU84133 lncRNA downstream 480152 41518717 ~ 41520497 (-) True G67358
TU84276 lncRNA upstream 31695 42149593 ~ 42149966 (-) True G67480
TU84322 lncRNA upstream 285923 42403821 ~ 42404270 (-) True G67522
TU84334 lncRNA upstream 365687 42483585 ~ 42484218 (-) True G67534
TU84337 lncRNA upstream 467929 42585827 ~ 42586109 (-) True G67537
TU84367 lncRNA upstream 774238 42892136 ~ 42892423 (-) True G67565
AMCG00021027 mRNA downstream 25488 41974859 ~ 41975161 (-) True AMCG00021027
AMCG00021026 mRNA downstream 312946 41673609 ~ 41687703 (-) True AMCG00021026
AMCG00021012 mRNA downstream 398496 41596652 ~ 41602153 (-) True AMCG00021012
AMCG00021008 mRNA downstream 633292 41366724 ~ 41367357 (-) True AMCG00021008
AMCG00021006 mRNA downstream 857955 41092869 ~ 41142694 (-) True AMCG00021006
AMCG00021031 mRNA upstream 119343 42237241 ~ 42238378 (-) True AMCG00021031
AMCG00021032 mRNA upstream 128099 42245997 ~ 42269261 (-) True AMCG00021032
AMCG00021030 mRNA upstream 185028 42302926 ~ 42315442 (-) True AMCG00021030
AMCG00021033 mRNA upstream 204209 42322107 ~ 42350197 (-) True AMCG00021033
TU84154 other downstream 398379 41600401 ~ 41602270 (-) False AMCG00021012
TU83728 other downstream 2895782 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 4368073 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 4932857 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 4954710 37040447 ~ 37045939 (-) False AMCG00020923

Expression Profile