RNA id: TU84320


Basic Information

Item Value
RNA id TU84320
length 2124
RNA type TUCP
GC content 0.35
exon number 3
gene id AMCG00021029
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 42423343 ~ 42465886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aATCGGAAAAGTTCAGAactctggcaTCTGCCCTCCATGTGACAATGAAATGAAGCTGGACGCCATCATGGAACACATGTGTGCCAGCGAGTTCGTCATCAAGACAAGAATCAAGGAGGTGAAGAGGGAGAACTCAGACCGCAAAGTGATcctgcagaagaagaagaagtccCTCAAGCTGGGAAACCTGAAGAAGAAGGACCTGAAGAAGCTGGTGTTGTACTTGAAGAATGGTGCCGACTGCCCTTGCCAACAGCTTGACAACCTGGGCCACCCCTACCTGATCATGGGGCGCAAAGTAGACAAGCAGTACCTGCTCACTGGCATCCATAAGTGGGACAAATCCAGCAAGGAATTCAAAAAGGccattaagaaaatgaaaagccacAATTGCCCAGCTTTCGAGACTGTCTTCAAATGATTGGCCCTGCTACTGCATCTTGAGACCATAAGAACTTGCACAAAAccccaaacattttttttaacatgtttttttttgtcattgaaatggattgttttgttttatatataaatatatctatacagATTTTACTCTTGTAGTGGATTGTCATATCATATGTTgaatcttaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgttattgCATCCCATTGTTGTAGATCATCTTTGTGatatgattctttttttttgtattaatgattaatttcccatgtgcattttgaaatgtacccaGGTTGCTGCCAAACGGACAGTCAGGGTAAGGGGATATGAATATGGCTTGAGAGAAATCATTCATTCAACAGTGTGGCTGGGCATGACCCTTTTACTTGAGGCAGATGCATCAATTAGCCTTCACATTACACAAGCTCCAAATATCATTGAAATCTGGCCTTATACTACTTTACTGACCTTCTAGAGGGAGTTCAATTCATGCAAACAGCAACATACCATaccacattttcaaataattacctctttaaaaataaatgggaaagaaatgcgTATAAAAACTATGGAACAGGTCCAaaacttaaaacacaaattttGAACTTTCCTGTCCAAACAGAAGTTTGAATGAAATAATGTAGTTAGAGGAGACATATTCTGGTGTTTCTTTCACGTTTTTTATAAGGAATTATTTTACTCCGAGAATATGAACTTCATATCATTGTATTCTAATATGTCTCATAGGCTGAGTgaactttttttccttcttctcaaACCCCCCACTCCCAACCCATGAACAGTTTAGGATTTgagagtttttttaattaaactgaatgaaaGTCTTTAATTTTTCTCTTTAAGGAATAATGTCAAAATTGTTCAAAGGCACAATTACCGTTGACCCAGTCTTGGAGGAACATACACATACCAGCACTGAAAGCACACAAACGTCTACATACATGCCACTTAGCTAAGCCAAGACTGAATGCAAATAAAGGTACTGCTTGTCAGATACTTTCTGTACAGCAAAGGTATGTCACACTTGGTGGTTTGTCTATGTAGATTTATCTTAAAAAGCCATGATAGAGTAAGAGATAGAAACATAATCACTCTATAATCAACGCtagcaatatatttttcaatgtttctttCTCTAAGTGCTGGACTCACTTAAAGTAGACTCAGACTCACAAAATAGTCATAATAGAAAATCAGTGTGGATGAAATATTTGCAGTATCTGTGGAACAAAGTGCAACTTTGACTGGGTCTGTCCCAAGTTTattcttcctttatttttatttcatttcattaaaaaaaaatgttttaaatcgcTTGGCAATACTGTGAAACACTGTTAAACCATTTTATCCGCAACATAAGAAGACTTTCACACATGATTGTTGAAATATATTTCCAGACTTTCGGACCATATATATTTAGTTCCTGCTGTTCCTGTACAACTGATTTTTTATCTTGAAAATTGTTGTATTCttgtacataaaacattattggCTGTCTTTAGTGAACATCTTTGCATTTAGTAGgcaaaagtgaagaaaaaaagaaaaaaaaacagtttctaGTAAGCACACCCTTCATTTTCCGGAGGAgagaatatttgtttaataataaactcCATGCCACAGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84321 lncRNA upstream 21845 42403821 ~ 42404266 (+) True G67521
TU84316 lncRNA upstream 30115 42395725 ~ 42395996 (+) True G67519
TU84275 lncRNA upstream 276144 42149559 ~ 42149967 (+) True G67479
TU84197 lncRNA upstream 441080 41984611 ~ 41985031 (+) True G67405
TU84188 lncRNA upstream 532132 41890671 ~ 41893979 (+) True G67398
TU84328 lncRNA downstream 7772 42473658 ~ 42473885 (+) True G67528
TU84333 lncRNA downstream 17642 42483528 ~ 42483927 (+) True G67533
TU84336 lncRNA downstream 119941 42585827 ~ 42586035 (+) True G67536
TU84366 lncRNA downstream 426142 42892028 ~ 42892439 (+) True G67564
AMCG00021024 mRNA upstream 301110 42122817 ~ 42125001 (+) True AMCG00021024
AMCG00021025 mRNA upstream 334455 42062717 ~ 42091656 (+) True AMCG00021025
AMCG00021023 mRNA upstream 410957 41983383 ~ 42015154 (+) True AMCG00021023
AMCG00021019 mRNA upstream 491366 41894833 ~ 41934745 (+) True AMCG00021019
AMCG00021017 mRNA upstream 564233 41841031 ~ 41861878 (+) True AMCG00021017
AMCG00021034 mRNA downstream 159498 42625384 ~ 42919615 (+) True AMCG00021034
TU84255 other upstream 372436 42052930 ~ 42053675 (+) True G67459
TU84094 other upstream 823998 41598223 ~ 41602113 (+) True G67323
TU84041 other upstream 1373553 41051472 ~ 41052558 (+) True AMCG00021005
TU83857 other upstream 2104290 40321113 ~ 40321821 (+) True G67108
TU83200 other upstream 5508675 36914815 ~ 36917436 (+) True G66551

Expression Profile