RNA id: AMCG00021032


Basic Information

Item Value
RNA id AMCG00021032
length 405
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00021032
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 42245997 ~ 42269261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTTGCGCACCGACCCTGTCGCAGCCGCCTTGGAGATGTCGGAGAGCAGCGAAAGCCGAGACGTGGAGACCTCCGAGGGCGATGACTACGAGAGCTTGCCGCCCACCGCCTCCCTGGCGACGCACATGACAGCCGGAGCCGTGGCAGGGATCCTGGAGCACACAGTGATGTACCCCGTGGACTCCGTCAAGACACGGATGCAGAGCTTACAGCCAGATCCTCAGGCTCAGTACCGCGGTGTGTATGAGGCTCTGCGCAGGATTGTGCGTACTGAAGGCTTGCTGCGGCCCCTGCGAGGACTCAATGTCACCATGCTGGGCGCTGGGCCGGCCCACGCCCTCTACTTCGCCTGCTACGAGAGAGTCAAGCACACACTGAGCGACTCAATGCCAATCTTGTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84276 lncRNA downstream 96031 42149593 ~ 42149966 (-) True G67480
TU84258 lncRNA downstream 170243 42075323 ~ 42075754 (-) True G67462
TU84234 lncRNA downstream 352013 41891038 ~ 41893984 (-) True G67440
TU84151 lncRNA downstream 648474 41596080 ~ 41597523 (-) False AMCG00021012
TU84148 lncRNA downstream 653268 41592521 ~ 41592729 (-) True G67368
TU84322 lncRNA upstream 134560 42403821 ~ 42404270 (-) True G67522
TU84334 lncRNA upstream 214324 42483585 ~ 42484218 (-) True G67534
TU84337 lncRNA upstream 316566 42585827 ~ 42586109 (-) True G67537
TU84367 lncRNA upstream 622875 42892136 ~ 42892423 (-) True G67565
AMCG00021031 mRNA downstream 7619 42237241 ~ 42238378 (-) True AMCG00021031
AMCG00021028 mRNA downstream 128099 42000649 ~ 42117898 (-) True AMCG00021028
AMCG00021027 mRNA downstream 270836 41974859 ~ 41975161 (-) True AMCG00021027
AMCG00021026 mRNA downstream 558294 41673609 ~ 41687703 (-) True AMCG00021026
AMCG00021012 mRNA downstream 643844 41596652 ~ 41602153 (-) True AMCG00021012
AMCG00021030 mRNA upstream 33665 42302926 ~ 42315442 (-) True AMCG00021030
AMCG00021033 mRNA upstream 52846 42322107 ~ 42350197 (-) True AMCG00021033
TU84154 other downstream 643727 41600401 ~ 41602270 (-) False AMCG00021012
TU83728 other downstream 3141130 39050216 ~ 39104867 (-) False AMCG00020970
TU83462 other downstream 4613421 37631800 ~ 37632576 (-) True AMCG00020943
TU83289 other downstream 5178205 37065163 ~ 37067792 (-) False AMCG00020922
TU83279 other downstream 5200058 37040447 ~ 37045939 (-) False AMCG00020923

Expression Profile