RNA id: TU74167


Basic Information

Item Value
RNA id TU74167
length 1227
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G59306
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 445632 ~ 446858 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCATTTCCTTTGCTATATGAAAGATTTCCATATCCGGTACGGACAGGGACGCTTGAGGAAGTTTCCATAGGTGGCGCCCCATGGCTTGTGAAGGGGGTCCACGTGTTTTCCTAAACCTCAACATTGGCCGTCATCATCCTAGGGGCGTTGCGTAGAAGCGCAGTGAGCGCCGCGGTGTAGCGTGACTGCAGTGACACGAGACCAGAGACCAGACATTGACGAGAGACAGGATAGACAGCCGGACCGCTCTGCACACGCTCCCACAGCGCAGTAGACAGGCAGAGCCGTACGGGTGTGAAGTGTCCGTATGTCTCAGGCGTGTAAGCTAGAGCTGGACAGTTGAGATGCGCTGCTTGGAATTGCGTTTGTTTCTCTGGTCAGGTATGCAGAATAGTCGCAGTAATATTGTTGCCTATTGTCAAACGGTCGGACACGTTGAGGTTGAAGAGCGAGTCTCAGTTGAAGGAGGAAATTAACAGAGCAGCTCGCTATTTTAGttctattaaatattaactCGCCCTGAACGGACAGCGGCAGCCACTTGAGCCATCACACGTCACACTCGTCTCGAGCGCTAACCTTCAGTGAAGAAAGATAAGGTTTTCCAAAAGAAGAAGCAACGTGAAGGGAAAGAGCGATACTGAAGTGCGCCACACAAAGGGGCGCCTGGCCGTCGCTCGGACAGGCTGTCGTCGTCTTGTTGCTGAAACGGGTGTCGATAGGAAACTTCCCCCTCCAGTCCCCCCATCCCATAGCCACCATCCCCTGCTTTCTGAAAGTGCACTGAATGTACACAACCCACACAGAGCAACATGTCAGAGGCCTCAGGCCCCTCAGGCCCCTCTGTCCCCGTTGAACGGAGCCCCCGCTCCGGGCCGTTTCCCCGCTTTGCGATGTGGCAGAGGGTTAGATCTGTACTTTACACTGTTATGGTATCCATAAGCACTGTTTAAACTTGGTGGAATCCACTCCGCTCAGTccatacccacaatgcactgtgtTGGGCACTTACCACGatcaattttgtgtttgtgttttgttgttttttgttctttctctggattatttttttcttttcttttcttttcttccacagCTGCGTATGTTATTTTGGTGCTCTGGTTGATCACACAACAGACATCTggtgtactgtatattttccaaGGTTCCTCAACATGATTAGCAAAAGgaataaaatgttacttttccTGTTCTGTAttgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74165 lncRNA upstream 177669 267748 ~ 267963 (+) True G59304
TU74160 lncRNA upstream 199415 245912 ~ 246217 (+) True G59299
TU74150 lncRNA upstream 225257 219605 ~ 220375 (+) True G59289
TU74216 lncRNA downstream 485443 932301 ~ 1002892 (+) True G59351
TU74257 lncRNA downstream 738425 1185283 ~ 1186234 (+) True G59381
TU74261 lncRNA downstream 782088 1228946 ~ 1229205 (+) True G59385
TU74263 lncRNA downstream 817634 1264492 ~ 1264739 (+) True G59387
TU74278 lncRNA downstream 1046827 1493685 ~ 1493889 (+) True G59402
AMCG00019877 mRNA upstream 27527 385026 ~ 418105 (+) True AMCG00019877
AMCG00019876 mRNA upstream 148320 281341 ~ 297312 (+) True AMCG00019876
AMCG00019874 mRNA upstream 174979 240359 ~ 270653 (+) True AMCG00019874
AMCG00019873 mRNA upstream 341984 77166 ~ 103648 (+) True AMCG00019873
AMCG00019872 mRNA upstream 370369 48107 ~ 75263 (+) True AMCG00019872
AMCG00019879 mRNA downstream 126900 573758 ~ 575695 (+) True AMCG00019879
AMCG00019884 mRNA downstream 627958 1074816 ~ 1108996 (+) True AMCG00019884
AMCG00019885 mRNA downstream 677676 1124534 ~ 1128690 (+) True AMCG00019885
AMCG00019886 mRNA downstream 1138165 1585023 ~ 1585622 (+) True AMCG00019886
AMCG00019894 mRNA downstream 1827521 2274379 ~ 2327335 (+) True AMCG00019894
TU74166 other upstream 102 441598 ~ 445530 (+) True G59305
TU74243 other downstream 628646 1075504 ~ 1078063 (+) False AMCG00019884
TU74774 other downstream 2794581 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 4376955 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 4908914 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 4911606 5358464 ~ 5359365 (+) True G60132

Expression Profile