RNA id: TU74236


Basic Information

Item Value
RNA id TU74236
length 798
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G59362
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 932309 ~ 958515 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaaactcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaggacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagcccagaactgtccacagtatccagatgagctctaactagtgcattgtacagtctgaacatcactgcccttgttctcaattctacacttttgacaatataccctagcaatCTGTTTGCCtattgtattgcttccccatattgcttggatggagaaagtgaggagtccacatagactcctaggtctttctcatgcgttacttcatctagatttgtacctcccatagtgtaattatagtggacatttttgttacctgcatgtaataccttgcacttgtccacattgaatttcatctgccaggtgtcgcccacaactgaatattatctaagtccctttgaatagcctgtgctgccgagattgtatctgctgagccacctattttagtatcatctgcaaatttgacaagtttgctaactatcccagaatccagatcattaatatagattagaaaaagcacaggccctagtactgatccctgtggaactccactaacaacctcactccagttggaagcgactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74226 lncRNA downstream 374933 547826 ~ 557376 (-) False AMCG00019880
TU74186 lncRNA downstream 485441 445596 ~ 446868 (-) True G59324
TU74184 lncRNA downstream 549454 382652 ~ 382855 (-) True G59322
TU74144 lncRNA downstream 764286 167758 ~ 168023 (-) True G59283
TU74141 lncRNA downstream 833215 96833 ~ 99094 (-) True G59280
TU74264 lncRNA upstream 305979 1264494 ~ 1264734 (-) True G59388
TU74266 lncRNA upstream 325910 1284425 ~ 1284745 (-) True G59390
TU74271 lncRNA upstream 388731 1347246 ~ 1347479 (-) True G59395
TU74272 lncRNA upstream 430830 1389345 ~ 1397225 (-) True G59396
TU74279 lncRNA upstream 535171 1493686 ~ 1493973 (-) True G59403
AMCG00019882 mRNA downstream 61413 869061 ~ 870896 (-) True AMCG00019882
AMCG00019881 mRNA downstream 338913 582350 ~ 593396 (-) True AMCG00019881
AMCG00019880 mRNA downstream 359482 535831 ~ 572827 (-) True AMCG00019880
AMCG00019878 mRNA downstream 450788 455460 ~ 481521 (-) True AMCG00019878
AMCG00019875 mRNA downstream 692176 235518 ~ 240133 (-) True AMCG00019875
AMCG00019887 mRNA upstream 916045 1874560 ~ 1889869 (-) True AMCG00019887
AMCG00019888 mRNA upstream 954926 1913441 ~ 1920755 (-) True AMCG00019888
AMCG00019889 mRNA upstream 1147315 2105830 ~ 2135939 (-) True AMCG00019889
AMCG00019890 mRNA upstream 1201663 2160178 ~ 2185195 (-) True AMCG00019890
AMCG00019891 mRNA upstream 1253162 2211677 ~ 2212773 (-) True AMCG00019891
TU74284 other upstream 626404 1584919 ~ 1586000 (-) True G59408
TU74395 other upstream 1365773 2324288 ~ 2327415 (-) True G59505
TU74434 other upstream 1496396 2454911 ~ 2480799 (-) True G59530
TU74449 other upstream 1536384 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 2073341 3031856 ~ 3034335 (-) True G59712

Expression Profile