RNA id: TU74284


Basic Information

Item Value
RNA id TU74284
length 1082
RNA type TUCP
GC content 0.56
exon number 1
gene id G59408
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 1584919 ~ 1586000 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAGCTAATGCCCTGAAGCAGAGGAGATAATCGCTCTACCCATCTTAGCTAAGCCTTTTCTACAGTAAACTACAGCAGAGCAGCAATGCCGGAACAAACAACAGAAAGTGAAGGAGATTAATTGTCAGGTTTTTATTGAGCTGGCATTtttaaacacacgcacacagatcCTGTGTAAAAGGTTAGtcgttctctctctcatatcaCTGATCTCACGGTTGCGTTTCGGGGTTTTGTCTGAGCTTCTCTGGATATGTGGCAGAAAGCAGCTGCTCGCCatcaaatgaattaaaacaaaatgtcacaaGAGATATTGGCTCTGGAGTCTGTGAGTGCAGCCGCGGAGAAGCCGCCGGAGGAGTCCGTGGCAGTCCAGTCTAGCCAGACAGGATGTGCTTAACAAAAGACGCGTAGTTGATGCAGCCATTGGCATCTTCCTGGCCAGCCATGAGCCGGTCCACCTCGTCCTCCGTCATCCTCTCTCCAAGCGTGGCGAGGACGTGGCGCAGCTCGGCGCCCATGATGGTGCCGTTGCCCTCCTTGTCGAAGACCCGCAGCCCCTCCACGAAGTCTTCGAAGTTGCCCTTGTCCTTGGACCGGGAGATGTGCTGCAGCATGGGCAGGAAAGTCTCAAAGTCCAACATCTTGCTGTGCATCTCCTCTGCCCGGGGTTTGCCCAGCACCTTCAGGACATCTGCGTTGGTCGGGTTCTGGCCCAGGGCCCGCATCACATCCCCGCACTGCGCGTAGCTGATCTTCATCTCCCCGGTCGGGGTGCGGTCGAACAGGGTGAATGCCTCCTTGAACTCCTCAATCTGGTCCACCGAGTACTCGATGGTGATGCTCTTCGGGTCGAATTCTGGCTCCTTGGGCACCACGGGCTCTGGCTCTGGCGCGGGGGCGGGCTTGGCCGGCTCCTTCTTCGGCTCGGGTTTCTTGGGTTCCGGCTTCTTGGGTTCGACCTTCTTGGGAGCCATGGCGCTGAGATGGGGGTCTGTGTACAGGGCAGGGCACAGATTCTGGCCTGCTCAACTTTGCCTTTTATACCATCTGCATCTCCACcaagggagaggggaggctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74279 lncRNA downstream 90946 1493686 ~ 1493973 (-) True G59403
TU74272 lncRNA downstream 187694 1389345 ~ 1397225 (-) True G59396
TU74271 lncRNA downstream 237440 1347246 ~ 1347479 (-) True G59395
TU74266 lncRNA downstream 300174 1284425 ~ 1284745 (-) True G59390
TU74264 lncRNA downstream 320185 1264494 ~ 1264734 (-) True G59388
TU74290 lncRNA upstream 19102 1605102 ~ 1662179 (-) True G59414
TU74365 lncRNA upstream 606334 2192334 ~ 2192547 (-) True G59484
TU74366 lncRNA upstream 609803 2195803 ~ 2205765 (-) False G59485
TU74368 lncRNA upstream 609803 2195803 ~ 2221194 (-) True G59485
TU74466 lncRNA upstream 988804 2574804 ~ 2575670 (-) True G59556
AMCG00019883 mRNA downstream 639030 944898 ~ 945889 (-) True AMCG00019883
AMCG00019882 mRNA downstream 714023 869061 ~ 870896 (-) True AMCG00019882
AMCG00019881 mRNA downstream 991523 582350 ~ 593396 (-) True AMCG00019881
AMCG00019880 mRNA downstream 1012092 535831 ~ 572827 (-) True AMCG00019880
AMCG00019878 mRNA downstream 1103398 455460 ~ 481521 (-) True AMCG00019878
AMCG00019887 mRNA upstream 288560 1874560 ~ 1889869 (-) True AMCG00019887
AMCG00019888 mRNA upstream 327441 1913441 ~ 1920755 (-) True AMCG00019888
AMCG00019889 mRNA upstream 519830 2105830 ~ 2135939 (-) True AMCG00019889
AMCG00019890 mRNA upstream 574178 2160178 ~ 2185195 (-) True AMCG00019890
AMCG00019891 mRNA upstream 625677 2211677 ~ 2212773 (-) True AMCG00019891
TU74395 other upstream 738288 2324288 ~ 2327415 (-) True G59505
TU74434 other upstream 868911 2454911 ~ 2480799 (-) True G59530
TU74449 other upstream 908899 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 1445856 3031856 ~ 3034335 (-) True G59712
TU74676 other upstream 1521801 3107801 ~ 3111347 (-) True G59720

Expression Profile