RNA id: TU74341


Basic Information

Item Value
RNA id TU74341
length 2623
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G59460
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2164521 ~ 2167440 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTATTGCAAACCTCAGCTTGTGCAACACAGGGTCACTGGGTTCTGGGTTTGACTTCTCTGCTAGAACCATAGCACTGGTTACCAATAAAATATGTgtcttagagagagagagagagagagagagagaggctcctACAGAGCCTTGAATAGCCTTGAGATCATTCTTGAGTTCTCCATACCTTCTTCTCAAACTCCTCTCCCTGTTTGACCTCGCGAGGGTAGCCGTCAATCAGGAAACCCTTCGACACGTCAGCCTTGGCGATCATGGCATCTTTCAGCATGTCCAGAACGGTGTCCTGGGGGCACGAGTTCTCCCTTCTCCATGATGGCAGACAGCTTCTTGCCTCTCTCCGACCCTGAGCCGACCTCTGCCCTGAGGAGGTCCCCGGTGGACAGGTGGGTGTAGCCATACTTGGCCACGATCTTCTCGCACTGGGTGCCCTTGCCGGAGCCGGGTCCGCCTGGGGGAAAGAGGAGGAAGACGTTCCTGGATCTCTCCCGGGCCTCAGACAAACCATACAATTTAAATTCCTTATATAACTTCTGTTCACGTGGTACTTAACTGTACAGATTGCATTGTTAGATGTATGTTTGGCACTTCTAGTATTTAGCACTGAAGCAAGTGTGAAGTCTTACGTAGGATTTAAacgaatttatttatttacgtctCCTTTCCATTCAACAGACAATACCTCTTGCTGTAGCAGGTAGACAAATACTTTGTGAGGAAAGGACTAGCCCTGCATTGCTCATGTTTGATGTGTTTGTCCCCTATTATGCCACATATTCCTCGTGAGAAATCTTTGGATGGgctacttctctctctcctttaacTGTCAAGAAAGCGTCACCAGTCTTGTTATCGAATCCTCATTAAGAgaagacacagacacatcaTTGAATATGATTAAagtagaataaaacacaacagatcCAGTTAACGGAAAACGCAAACATGAGTTAAATTACAGTTTAGTTTGAGTAACTCAGAGCTCAGCAGGAACACATCCTAACAGAGCACAACAAACAGACTCGGGCAGTGCTGTACAAACGTGGGTGGGCCTGACTTGATTTCCTGAACTCGGAAATGAAAACAGATGCACTTTGTTGTTGATGCCGTTTACCACAGGGACAAAACGAAGACGGAGTAAATTAAcaaccagaaaaataaatgtttcagacTCACCCACGACGAAGATGATCTTGCTACCTTTCAGTTTATCTGAAAGAGATACGGAAAATGTTGAGATACCCaggataacatttattttttaacctccCTGGAACAATTAGAGTAGAGTCCCCTGAGCTTCCTAGCGAAGACGCCGGGTCATCAGGGTCCACGAGACGGTACCTGGTGGACCGCTAGGCCTGACTTCAACGGCCTTATCTGACGAACAACTATTTCCCATCGAGGCTGCAGATGTCTCCCCCTCTTCTCAGGCTCCTTGCTTTCCCTCCGACCAAAAGTTTTCCTCTGAAAGACtggctgttttttctttccttttctttcccttcttccGCTGGCCAGTGAAACATTCAAAGTGTCACCAGGCAACAGTTGCTAGCATAGCTGCCCAGCCCCAAACCACTTCAAAGCAACTATTTCTGGCAGACGCTCTAGTTTGGGAGTAATGTTtagacaaatgtgtttattcttttttgAAACGGTTAATCTAAGagtatttcccttttcaataagcgtaatgttattttatgaataCGCTTTACTGAACTTGACACCGATTggagcatttttaaaacataacagtCCATCGCAGCCCAGTGCTCGTCTCAAACGGCAGAAACAAGTCAAAACCATGCCTAACCAATAACCAAGAAGCTACCAGAATGGAAGGTTTACAGATTTGCTGTCTTACTTAGTGTGACTGTACTTCTAGAGGGGTTACAATAATACCATAGTGAGATAAAGGAGTGCTGCTCCTTAAcgaaatatgttatttttactCATTCTTAAATCATACCACCATCTCACTGTAGAAAGACCCTATAAAACCCTGCCCCAGTGTCTCATGAAACTTTATCCTGGAGCTTCGAGGAGGTAATTATAAGTTGTTCCAGAAAATTCCTTGGGAGGCACGTTAAATCTATTAATACCCCCCTTGACTGCTCCACTCGTGGCTCTCTATGCTTCAGAAGTTGCCTAATTATAGACCAGGCTGTTAAATTGGTACTGAGAACGTGCGGCCTCTCCTGCTCAGTTTGTGACAGGGTGTCTGCACAGCACCGACGAGCCCAAGGTCTTCAGTGCACCAGCCCTGGGTTGAGAAACGATGGAGTGCACGTTCTGCTCTTCAAGCCTCGTTCCTCCTTCAGCCGCACTAACGATCGTACGGGAGTGTTAATTAAACATCACACTGCTTCGATGGAGGGTGGGTGGAAAGGTCGTTTTGTCGGCTACAGAAAAAGCGATCTGCGGACCGGTACAAAAGGCTGCATTGTTTTCCAGGGCGAGGCTGGCCTTACCAAGCGCACTCTCCATGGCGTTTCATTTAGCCACCGTACTATAAACCCATTCCCCCGAGTTGAGCCCAGTCGAGTCACAGACTCACGGACACATCGAAACAAAGGCCGGTGCTGTGGAGATAAAGGAGAAACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74340 lncRNA upstream 917 2161935 ~ 2163604 (+) True G59459
TU74319 lncRNA upstream 129727 2034561 ~ 2034794 (+) True G59440
TU74302 lncRNA upstream 367380 1796926 ~ 1797141 (+) True G59425
TU74287 lncRNA upstream 555148 1609017 ~ 1609373 (+) True G59411
TU74278 lncRNA upstream 670632 1493685 ~ 1493889 (+) True G59402
TU74348 lncRNA downstream 13163 2180603 ~ 2181069 (+) True G59467
TU74467 lncRNA downstream 416254 2583694 ~ 2634130 (+) True G59557
TU74468 lncRNA downstream 416254 2583694 ~ 2588069 (+) False G59557
TU74500 lncRNA downstream 548088 2715528 ~ 2716915 (+) True G59578
TU74548 lncRNA downstream 620470 2787910 ~ 2788239 (+) True G59625
AMCG00019886 mRNA upstream 578899 1585023 ~ 1585622 (+) True AMCG00019886
AMCG00019885 mRNA upstream 1035831 1124534 ~ 1128690 (+) True AMCG00019885
AMCG00019884 mRNA upstream 1055525 1074816 ~ 1108996 (+) True AMCG00019884
AMCG00019879 mRNA upstream 1588826 573758 ~ 575695 (+) True AMCG00019879
AMCG00019877 mRNA upstream 1746416 385026 ~ 418105 (+) True AMCG00019877
AMCG00019894 mRNA downstream 106939 2274379 ~ 2327335 (+) True AMCG00019894
AMCG00019893 mRNA downstream 173348 2340788 ~ 2351023 (+) True AMCG00019893
AMCG00019898 mRNA downstream 247424 2414864 ~ 2416601 (+) True AMCG00019898
AMCG00019896 mRNA downstream 275811 2443251 ~ 2454771 (+) True AMCG00019896
AMCG00019897 mRNA downstream 314465 2481905 ~ 2483959 (+) True AMCG00019897
TU74243 other upstream 1086458 1075504 ~ 1078063 (+) False AMCG00019884
TU74166 other upstream 1718991 441598 ~ 445530 (+) True G59305
TU74774 other downstream 1073999 3241439 ~ 3250062 (+) False AMCG00019934
TU75012 other downstream 2656373 4823813 ~ 4835797 (+) False AMCG00019967
TU75242 other downstream 3188332 5355772 ~ 5361863 (+) True G60137
TU75235 other downstream 3191024 5358464 ~ 5359365 (+) True G60132
TU75390 other downstream 4015272 6182712 ~ 6186084 (+) False AMCG00020000

Expression Profile