RNA id: TU74395


Basic Information

Item Value
RNA id TU74395
length 3104
RNA type TUCP
GC content 0.52
exon number 2
gene id G59505
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2324288 ~ 2327415 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGACAGCGATTGCATCCTGGACTGCTCTCTCCAGCGTGGGGTCAAACTCGAAGCAAACCAACAAGAGGAGACGTTTAGTGCACACACCGCTTTTATTTCTGAacacaaatcatacatttatctCACATCAATTATTGTACAAAAATGTCATCTCCCTTTTGTACAGGAAAAATAGACGAACACAGAAAAAGCACTACACACAGACGTAATGCTGATCTCGAAACCCGAAACAAAAATGCGTCTCAGACGAATCCCAGAGCAGTCcttagcagcagcagcagcagcggcggcACAGGGACCCTCGTCAACGTGACTGAAACAAGCCCCCGTCCCACACAGGGCGTCCATCCGCTGTCCCTCGGGACGGGAAAGAGTGAGACCCATCCGCCCGGGGTTGAAGAAACGGACACCCGACATGGGGCGACCCACAGGACAGTTCGACAGCCACGTGTCCCGGGGAGGCCCATGTCTCCCAGATGCCTTTTGACAGTCCAAATCGCTCCAGTTCTCCGGCCTCAACGCAGCTTGATCCTGCTCCACTTGACACACTTAACCCATGGAAGTCTGGGCCTGATGTACGGAATCGGAGCTTCACGCCCATCGATGCTTCTGAACCCGATTTGAGAAATCTATAAGGACTCTAATCACACGGTGCTGAAAACCCCCGCTGAGATCTGAAGTTGAAATCTGCAGCACCCTGTATAGCATTGCTGGCACGGTGGCGAACGGATATCCGTCACGGGAGTCACGGCAGACGATAAGATTACCAGACAGCAACATGGACTGGGATGTCAAAGAGGGTTTTGAGTGATTGGGAGAGGTCCCCAAATACGGACAccacataattataatacaaaatcaaaactgatCTATGTTTGTGTGGTTTAGTTTCCTTGTGTGTGCACGTCTGCGTCTGTCTGTGCAcatgtgcgtctctctgtgtatgcgtgtgcgtgtgtctctctgtgcatgtgtgcatgcatgcatgcttgCGTGTCTCTCTGCGGGTGCCTGGGTGTGcatgtgtctctctgtgcatgtgtgtctctctgcgcgtgcctgtgtgtgtgtgtgtgcgcgcgtgtctctctgtgcgtgcgtgtgtgcgtgcatgcgtgcatgtgtgtgtgtctgtgtgtgtgcgtgcgtgtccTCACTGGGATTTGTACATTTCAGCAGTTAGCAATCAAGCGTCAAAGATgcttttataatattgttttcataggCCTTTACTAATGATCAGAGAAATGAAACGGCTATGTCACTTGGCTACGATTCTTCTTAACTTCCTTTTATTCCGTCTCTCCGCAGCACCGGCAGCAGCGGTCCAGGCGAGATCCTCAGAGACGGCAACGAATGGATCAATCCCGGTGTTCAGACTCGGGGTCTTACCTGCTCGAGCCGCTCAGACAGTTCACAAATCGGCTGCCGAGTTAAAGGCAGGCCCGGATCAACGCAGAGTCCCACGCGCATCCCCTGAACCGAGGAGCCCCCCAGAGTCGCGTTTGTGGATTGTGCACCGACAGTGGACTTCACTAGAGCAGTCACACAACGACTCAACACACTCATTGGCTTACAATCGTTCCTTGTGTCCCCTTGACAAAGTGTGCTCAGGTTGTCCCTGTTGTTGGAACGCTtcccaacaaaataaataaataagagaaatgACGTCTTTGTACAGGGCGTACGTTGGCGATCAAAGTGAAGGCAGCAGGAGCCAAACCGACAGTCTGACAGACTAACACTGGCTGCAGAGCCGGAGTGAAGGCACGGTTCGCCCCTTTTATTCTCAAGCGAAGAgagtcataaaaacaaaacacacacagacgacCCGAATAACACAAGTAACCGTGAAAATCAAAATGGCACGCTGACCTCCCGTTTAACAGCTGCCCCGCCTGCTCGGCACACGCCTGACCCGTTCCTCCCGGGCCGGTGGAGGAATTCTCCACACGGTCCTCCTTTAACACCCCAAAACCTCTGCATTCCAGATACACATCCCACTCTaagatctctctctcactgcaggGTTAGTTCTCCGCTGTAAACCGTCTTCCTGAGTAACAAGACCGGTGGGAACTGATGATGGGACGACGGAGGCAGGACGGGTTCCGATCACAGCCTCGCTTGGCTCAGATTCAGATCAACACACGCTATGGATCGGCGCTGCCTCGGACTCCTGTTCGCTTCCTCGCCCACAGcagtattcatttatttatgcatttcaacTCTGGACAGTAACACCGGAAGAGGCAGCTTTGACACAAACGTGAACAAAAGGACGGAGTTCACAGCGTATTTTACGTGACCGATGATTATGAAGACAGAAAATATGATTTACGTGCAGGGGTTGTATACAAAAGTTATCCTTTCCTATGGTAAACTATATTTGTACACAATGAAAACCTCTCCTTTCTCAGGGGGACAGGAGTAGCACTGGGGTGGGATTACAGCCCAGAACCACCACCAGAACACCGATTCCAAGAGCACCTGACTGGCCGGCCTGGCAGTAGCGGTGGTCCGGTGTGAGTTTTGAAAGCGAGGAAGCGAACGCAAGAGGCAAGGGCCACTGAAGAGATCTGTGCGAGTTTACTGTCCACGTTCAATTATAATAGGAGTTCAAAGCCTGGTGAACTTTCTTCACCTTCCCCCAGGTCCCCAACCCCACGTCCTCCCAGGACTCCTTCAGCACCAGCAAACTCCACCGAAGAACCCCAGGACAGGGTGATGGGGCCACCCCCGGGACCACGGGGCAGAGGATTCATCCATCGGGGAAACGACCGCCTTGAGATGCGCTCCTTCGTGCGCCAGTTCCAGttttaaagacaaatgcaaCGAAACCGAAAACAAAAACACCGAACAAAATCAAACGATAGAATAACTGGCGCCTCCTTCGCTGCGCTCCGTCTCTCGAGTCCGGGGCCGGGCTCCTCTCCTCTGCGCTATACATAGGGCCGGCCGTGTCTGAACTTCCACCGCTTGGAGCGCAtcctgaagaagaagaacatgACCATGAGGAAGACGCAGGAGGCAGCATACAGCAGCACGCACAGGCTCATGTCGACACTGGAGAAGCCCAGGCCCAGGAAGCTCATCCCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74368 lncRNA downstream 103094 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 118523 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 131741 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 662109 1605102 ~ 1662179 (-) True G59414
TU74279 lncRNA downstream 830315 1493686 ~ 1493973 (-) True G59403
TU74466 lncRNA upstream 247389 2574804 ~ 2575670 (-) True G59556
TU74817 lncRNA upstream 1163303 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 1269790 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 1312623 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 1318624 3646039 ~ 3647334 (-) True G59826
AMCG00019892 mRNA downstream 77128 2226804 ~ 2247160 (-) True AMCG00019892
AMCG00019891 mRNA downstream 111515 2211677 ~ 2212773 (-) True AMCG00019891
AMCG00019890 mRNA downstream 139093 2160178 ~ 2185195 (-) True AMCG00019890
AMCG00019889 mRNA downstream 188349 2105830 ~ 2135939 (-) True AMCG00019889
AMCG00019888 mRNA downstream 403533 1913441 ~ 1920755 (-) True AMCG00019888
AMCG00019899 mRNA upstream 136221 2463636 ~ 2479709 (-) True AMCG00019899
AMCG00019913 mRNA upstream 362487 2689902 ~ 2690317 (-) True AMCG00019913
AMCG00019914 mRNA upstream 377914 2705329 ~ 2705778 (-) True AMCG00019914
AMCG00019912 mRNA upstream 382547 2709962 ~ 2742168 (-) True AMCG00019912
AMCG00019911 mRNA upstream 445154 2772569 ~ 2781304 (-) True AMCG00019911
TU74284 other downstream 738288 1584919 ~ 1586000 (-) True G59408
TU74434 other upstream 127496 2454911 ~ 2480799 (-) True G59530
TU74449 other upstream 167484 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 704441 3031856 ~ 3034335 (-) True G59712
TU74676 other upstream 780386 3107801 ~ 3111347 (-) True G59720
TU74745 other upstream 838822 3166237 ~ 3183066 (-) False AMCG00019942

Expression Profile