RNA id: TU74434


Basic Information

Item Value
RNA id TU74434
length 3543
RNA type TUCP
GC content 0.48
exon number 2
gene id G59530
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2454911 ~ 2480799 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatatatatatatatacaaacacacacacacatttctataGAGAACAAACTTTTAAACACGATAAAAGGTTATTTAATCAGAACTGTAAGTTCTGTAAGACTGAGTCATTTTATCtattaaaaaatagtatttcTCTTGTAAATTGCATTGAATGAATCATCGGGAGGACGTTCCCAAAGCCGCGGCCCAAGCGTTAACCAGGGCTTTagccgggagagagagagagagagagagagagagagagagagagagagaggaggatgaaTGGCCCTCCAGTCCAAGCTCGCACTGTTACGATCAGTGTTACAATAAGCCTGGACGACAGTCAGGACCCCCGAGAGCCTGCAGTGGACCCCCCCGTCCCCCCTCCCACATTCACCGCGTCAGGTTTTAGTCTCTCGTCATTCCTGTAAACGTCGCACAACTCCTTAGTGCAATAAAGCGCCAGGCCCCGTACGATCCGTACGGCACCGGTACAATCTCCTGTACAATCTCACACTTCTTCCATAGCCCCCCTCCCCGGACCCCCTCCAAACCCCAGTCCCCCCATCACCGTCTCTCTGAAGAAACCTGCAGTCTGACAGAATCTCCCCCTCGGGGAATCGATCCCAAAAGAAGATTTTGAAGCCAGGAATCGAGTCTAAAGGGACGCAGACAGACCTCGGGGGAATCCGGActaggatttgaacccagggTCGTCCTTCACTAGTTCCCCGTGTAAAGGAACGCTGTGTTTACAGCCAGTCGTCACCACAGTGTTTTCACGTGTCATACAACACGGGGCAGAACCTCTGCTGAGATAGAGCAGGTGTGGGAAGActggcaacaaaaacaaactgtgcaGGATTTCCCCCGAGACCTGGAGAGGCATCAATTCCTCCAGTGACTAGAGTaatcaatctatatatatatctggcaAGAGGATCTGAAAACATTGAAAGGAAAAATCccaaagaaaacagaacagaagtaTTTTGTGCATGGAAACCTCAGTTTGATTACCCAGTTCCTTTTCTTGAGAAGTTTGTGggttttttcctgtgtttttaatactCAAGTGATcacctaaaataataattgagtcCTGACTAGAGATTCTGTAAAGCTGCTGgactggaaagagagagagggagagggagagaggagacggAGGAGGCTCCTAGGCCCCAGTAGTACTCCATTAGACAGACTGGTGGTGTTgtgtgcaaaacaaaagcattaatTTCCAATTCTAcaatggcaaaaaaacaaacaaacaataaaatcacCTTGTCTGGGTCACATGGTTCAAAACGAAGGCCCTTATTTCAGCACCTTTTCCAAAAACCCTCTCGTTGTCTTTTGCTGTGACCCACTCAGGTCTTCCCAACATCCCGTCTCTGCGGGCCGCGGCCCCACACTCTCTGTTCCACAAGCGCCGTCAGGTTTGGTTTCGAATCTCACTGAGGAAACCAATCaagagaaaacaggagatccCCAAAAGCCAACAGGCGCATGTGACGCACAGCAgcgtttctgtttctttctgggACAAACGCGCCGCACTCTGGACAGTCAAGGAGACATAAAGGCAGTTCTGGGCGccgcaaaacaaagaaaacaaaaagaaaaaacacaccaaaaacgCCAGAGTGTCTTGGGCTGTTGCCTCTCACTTCGGCTTCACTCTTCCTGTTCAACAAAGGTTTACTCTTAGtcgtgtttttctctttctagtGCAAATGCAAGAAGCCAGCAGGAATTCGTATTTCCCCAAatccaatacaaaaataaaatgagtcgGTGAAGGAGGCGTGGAGTTTTCCAGCGACATTCTGCCCAACTCCGGTCTGAGCCTCACAGCACGGCAATGGAGGAAAACCCCTtagagcccccccccccttcaccGGTCAGAGAAAGTGCTTCacatccccacccccaccccggcCCCCCACCCAGGATCCCAACAGAAAAACAGTCTCACGTGTTAAATGTTACATCGTCAGGCAACTGCAGCAGCTTTTTGCAAGTTAGTGGCTTCATTGATTTATTCTCTATTAATTTTGCATGCAAGCGGCttgtggctctgtgtgtgtgtttgtgtgtgtgttgcgtgtgtgttgcgtgtgtgtgtgtgttatgtgtgttgtgtgtgttgcagggctCTGAGTGTGACTGGACCAGGCGTGTGTAAAGATGCGAGGAGCTTCTTCCAGCCTAGCCCATCTATACACAGTGACTCGGGCATGGACACTGGGCTCCCGAAGGGCCCCCAACACGTTCACCTTGAGGGCCCCTCTCTCCAACGGCCGACTCTACCGCCAGTAACGCAAACGCTCTGACTTCGTTTACCAGTTCTGCTCAGCCCCGCAGTTTCAACTCAGAACTGACTCGACAGTGTTTGAAAAGGAACGGCCTCTCTCTCGCCAGGACCCACGTCTCGCTCACATCAGTGCTATCGAGCGGAGTGAAAAAATCTCATATTGCCTAGTTTGAATCTCATCCTGTAAACTGTCATCTGCTGGAAACACAGGCGGCTCACTTGTGATTCTGCAGGCGTCTCTGTAGCTCTATCTCCTCGTACGGAATTGGGGGTTTTGATTTCCGCATTCGTATGAACGaactataaaacataattataattctGTTGTATTAATCAATCGGTCACAGTGCAACACGTGTTCTACATTTCTACAACATATCTAACCTCCATCGCACAAGCTGCTTCAACCTCTTTTGCGACGGGGCAAACCGAACTTCACTACCAAAGCTTTCACTTGAGTCTTATTAAGAAACGTCAGCTAGAAACGTCGTACAAGGCAGGCAGGTCAACATAATTATCTCCGTGACAAAATCGTATACGTAGGCAGCTTCTAATAGTCCGCACTGAACTCCTCTGTGAACAGAATTGGTGTTGCTGTTGTAGAAAGTGATCCTATTGAAACGTCGGTCCTACAGCGAACGCTGACGCACACTGCTATCGAGAGGTACGATGCTCTGTGATGAATTGTAAGAACTCGGCCTGTTCTGTGCCACATGCAGAGACTCGTTATCTGCACTCCAGCTGTACTTCTCCCACGTGGGGCGAGGAGAGACCACAGAGACCCGCGGCGCTTGCTGCACCAGAACCGCAGTGCGGGAGGGAACGACACGAGAGTATTCATCACGAGGAGGTGGAAAATGTAGATGCTCGAACGGGCCAGACTTTCCTCATTTAGTCTTTTCTCTGAATGCACTTTTGGTTATACAGGATGGTAGTGTATAGTTAGTAACATACTGTTGATTATGTCCACCCCGCTGTCtatttcaatttgaataataaCAGACGCAATCACAAAGCAGCTCTCTTCTCACACCGCCTTTCAGCGTGAGACACAGACCCCAGACCGGCCCGTGCCTCGGGGGCTGTCAGTGAGTGTAACCGTGTCGCGCTGCTCTTGTGAGACCGTGTGCATGAGGCATGtgtgtttaagtgtgtgtgCCGGCCAGGTAAAGCAGTGCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74368 lncRNA downstream 233717 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 249146 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 262364 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 792732 1605102 ~ 1662179 (-) True G59414
TU74279 lncRNA downstream 960938 1493686 ~ 1493973 (-) True G59403
TU74466 lncRNA upstream 94005 2574804 ~ 2575670 (-) True G59556
TU74817 lncRNA upstream 1009919 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 1116406 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 1159239 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 1165240 3646039 ~ 3647334 (-) True G59826
AMCG00019892 mRNA downstream 207751 2226804 ~ 2247160 (-) True AMCG00019892
AMCG00019891 mRNA downstream 242138 2211677 ~ 2212773 (-) True AMCG00019891
AMCG00019890 mRNA downstream 269716 2160178 ~ 2185195 (-) True AMCG00019890
AMCG00019889 mRNA downstream 318972 2105830 ~ 2135939 (-) True AMCG00019889
AMCG00019888 mRNA downstream 534156 1913441 ~ 1920755 (-) True AMCG00019888
AMCG00019913 mRNA upstream 209103 2689902 ~ 2690317 (-) True AMCG00019913
AMCG00019914 mRNA upstream 224530 2705329 ~ 2705778 (-) True AMCG00019914
AMCG00019912 mRNA upstream 229163 2709962 ~ 2742168 (-) True AMCG00019912
AMCG00019911 mRNA upstream 291770 2772569 ~ 2781304 (-) True AMCG00019911
AMCG00019919 mRNA upstream 330552 2811351 ~ 2825112 (-) True AMCG00019919
TU74395 other downstream 127496 2324288 ~ 2327415 (-) True G59505
TU74284 other downstream 868911 1584919 ~ 1586000 (-) True G59408
TU74449 other upstream 14100 2494899 ~ 2507020 (-) True G59545
TU74667 other upstream 551057 3031856 ~ 3034335 (-) True G59712
TU74676 other upstream 627002 3107801 ~ 3111347 (-) True G59720
TU74745 other upstream 685438 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other upstream 697242 3178041 ~ 3183066 (-) True AMCG00019942

Expression Profile