RNA id: TU74676


Basic Information

Item Value
RNA id TU74676
length 3547
RNA type TUCP
GC content 0.46
exon number 1
gene id G59720
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3107801 ~ 3111347 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtatttttttagattaatattAAACCAATACACTAATGAacagtattaaaatgtgtgctgtACCCACACCCACACGGAGCCCTGGTTCCGCCCCGCATCATGCCAGAGCCACTGCCAGTAACTCACCTACTTCTTCCACCAGCCCACAACCGCTACTCCGACCGAGAGGGCACAGGGACTGCCATCCACACTTTGCACAGCCGCACTGCCGGGGCTACAGTACAGACGGCTAATCCCAATTAAAAGCGGCGTTTGTTCTCTTTCCTTCCAATCACAGAAGGACAGCTATGGAGGGGCTGTGACACGAGAGATCCTCGGCCGGGAATTCCCCTCCGTGTCCGGTAAACGAGCAGGCAGAGATCGCTCCGCTGCTTTCCGGGCAGGCTGTCAAGCGAGTGGGCACACTTCCATCAGAACTGTTATAAAAGATGTTGTTAGTCCAGTTTATGATCATATGAATTTGACCCGGTGCAGTAGCTGCTACGCTAGCACTGGTCAGGGGCGGTGTGTACCTGACTAGATGACACTATTATTATATCAGGTACCAGTTATTACCCAATGCTACACACTGAAATGCAGTAATGTTTGTGCCTTGTAAGTCCAGCAGGAACCTCTTTTCAACACGAGAGAGCAAGCATTTTTCAGACGGTATTTTCTGTAATGTGTTCCCACTCTGCATGAGTTAGTGTCGCTGGATGTTTGGCATTCGATGATGACGCTGGATTGTTACTTGTCGTACAAATAGAACATTTACTACATCCGATAATACGGGTGAGGGTCGGCGTGGCCTTCGCTGGTGGAGGGTTGGGTCAGCCTCCTGTGGAGCTGGTGATTGTGTTGAACACTAGAAGGAATGAATTTAAAAGTCATGGGAGCTGCTATAGCGCGTAGCTCAGAGATGGGAAAGAAAGATTGgttttattggattttttttgttttggtgtgctTGTATATACgttgccttttaaaaaataatgaactgtCTGTGTAGGTGCAGGTCACGCACTTGGCCTATGCACACGGCTGTATCACGGGAACTGCTCCGTGGGGTTAAGCAATGATGTAACTATACCATTGAGAACACAGAGGACAAACCATCCAGAGGAAGACTGAGCAGTTTGGCACCGTTGTGTAGCACGGCCTGCCCGCGCATGCAGGGCATCATGGGCGCTCACGGTGGCCACGTCGGCGCACGCTCAGGATTACGGTCTGTGTCCATGTCGGTGTGTTCGACTGCTCCCCAGAACACGGCTTTTTGCCTTACAGGAAAGGCAAGGACCCCagatctttgtgttttttcccattCATACCAGCTGAGCTACGCAGTCCTAGAAGACATTTCAAGAATCACATAGTCTTAGTTACTGATAGGCTATTGGATGATTGCCTTTCCTTGTGTGCAATGTAGTTTAGTTTCAGGGGTTATAGGcttggggggtgggagggttTAAGCAGGGATATCCGTGAACTCGGCAGTGATGTAGAGATTGTTGGGGTGAATGGGAGCGACAGGAACACGGTCGCGGGAGCTGAAAAGCagtgagactctgctctgtccCTCTGAAGGTGTGGGGTCTCTGTCCCCGAGCAAACTGCCCTGATGTTGGGAGGCAATACTGGACGgctgtttttccattaataCTCCAGCTGTTCAGTTAATACCTTTTGAAAGCAAACCAGAGTGGGAAACACGACTGGGCTCAAATATCCCCAGTTCATAGCCAGCCGTAGAAAGGATTGCACATTTCTCTAAACAGGTCAGTGATGTCACGGCAGAGGCATCGATCGGGACAGCAGAGGTGTTACCACTCGAACCTGGGGGTGCGGCCGCGTCtcctccgtgtgtgtgtgtgtgtgttcggtCTTAATGCTGGGTGTACCGCAGTGCATCTCTTTCCACATGTGGATCGGCtgccaattattatttttattttcgaTATAATCAGCTGCATCGGAATGTTCCCCCTCGACAGCCATGGAAAACAATCGCAGGCCAATAAAACCTCTCGTCATAAACTATCAGAGCCCCACCCCGCACAGATGTCTGGCTCCTATTATCGAGCAGCTGGAGCGGCGAGGAGGAGGCAGCCGCTCTGTGTTCGTTGTGTGGATCTTTACGGCCTGCGGCATTTTCCACTCACCGCCACTCACTCAGAGAAGCCAGGGATGGGTTTTGAAATAGTGGACACCTTACCCTCCGTCCCAGGGAGACGAGTTTTTAAAGTGGCCCCTGGTGTAGAAGGAAAGAATCTGTGAATGCATTAACAGTGTTGTTAACTTGCTATATTGTttcacttttagttttttgcatgtcacgtttttatttaaattattcattctAGCCATTACCATGctttcttgattttatttattaaccgTATCCTCATTTTCAAGTTGCATTGATCGCATAGGCATAGCTCAGCAGGGCCACTTAACCCACATGATAGGAAAGAGTGTCAGTGTGAATTAGTTtcaatttgtatgtatattaaagatggatttgtattacatttacatttcagaaaactgttgtattattatgtgGCGTCTTTTAGCCAATGAAAACAATTCAGAAATGGGTTCCTTCTCTGTTAGGGGCACCTTTTAAACTCCGGATTCAAAATGTCCTGGGAAAATGGGTCTAAGAGGCATCCCTGTGAAGGACGACCATGGGATGTCAAAAGCATTTTGGGGGGGGATTGTGTCGGGGCATTTTATCGTGATTCACTGTTGTAAATCTGGAGATATGGACCTCCCAGTACCAGTTAGGGCCAGTCTGAGCCCGGTCACGTTGCACGGTTTGACTGATTGATGGGACAGTAATGGGGTGTAATTAGCAGAAGGCACCAAACGATGAGCTAACACTGAAGGGAGCTTCTTCTcttaaacacaacacagctttATAAAGATAGGTATTGAGGGTTTGCTTAACGTGATGAGATGTCCCCGTCTAAGAAAGAGGCTCATAGCATTTGAAAGCTTACACCCAAGCTTGAAGAGACTCAGGCTCGTACTAACATGGAGACCATTCATTgatcttttcttgttttggtaTTTTCCTTGGTATAATGTATTCCTATTTCTTAAAGGAGACTGTTAGACAATGCAAGACCAGCTcctgctttgtatttttaaaactatctGGAAGTATTTGTGAATCTCATctcggttttgtttttataattatccGTATATCATCTATCAAATCCTTGGCCTGCGTTCGAAGGCAGAGCTGGAATATGTGTGAGGAGGAGGCCACGGCAGCTGGTCCAGAGGAGTGGAAAACTGAAGTGGTTCTTCTAAAAGGAGTGGAAGCAGCCACACGCTTTGCTCTAACACAAACTGTGCTCTTAAACTCATGCGATTTATTTTGTGTCTCGGTTCTTTTgacttgtgtctgtgtgtgtgtgagtgttgtgtgCCCATTTCTTGGATTTTGTTTGCATGtctatactgttttatataggTAGCCGTAGACCTTAGTACTGGAAATCtcaatgtttttacatttgtttgcaaatacacaataaatattataataaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74466 lncRNA downstream 532131 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 886607 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 902036 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 915254 2192334 ~ 2192547 (-) True G59484
TU74290 lncRNA downstream 1445622 1605102 ~ 1662179 (-) True G59414
TU74817 lncRNA upstream 379371 3490718 ~ 3491049 (-) True G59810
TU74835 lncRNA upstream 485858 3597205 ~ 3597760 (-) True G59825
TU74837 lncRNA upstream 528691 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 534692 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 559676 3671023 ~ 3675014 (-) True G59852
AMCG00019928 mRNA downstream 53294 3034391 ~ 3054507 (-) True AMCG00019928
AMCG00019927 mRNA downstream 117931 2970844 ~ 2989870 (-) True AMCG00019927
AMCG00019922 mRNA downstream 165166 2921041 ~ 2942635 (-) True AMCG00019922
AMCG00019923 mRNA downstream 198428 2884280 ~ 2909373 (-) True AMCG00019923
AMCG00019918 mRNA downstream 274395 2826323 ~ 2833406 (-) True AMCG00019918
AMCG00019933 mRNA upstream 748 3112095 ~ 3129430 (-) True AMCG00019933
AMCG00019939 mRNA upstream 46937 3158284 ~ 3165762 (-) True AMCG00019939
AMCG00019942 mRNA upstream 59523 3170870 ~ 3185965 (-) False AMCG00019942
AMCG00019940 mRNA upstream 77310 3188657 ~ 3190995 (-) True AMCG00019940
AMCG00019943 mRNA upstream 83430 3194777 ~ 3201209 (-) True AMCG00019943
TU74667 other downstream 73466 3031856 ~ 3034335 (-) True G59712
TU74449 other downstream 600781 2494899 ~ 2507020 (-) True G59545
TU74434 other downstream 627002 2454911 ~ 2480799 (-) True G59530
TU74395 other downstream 780386 2324288 ~ 2327415 (-) True G59505
TU74284 other downstream 1521801 1584919 ~ 1586000 (-) True G59408
TU74745 other upstream 54890 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other upstream 66694 3178041 ~ 3183066 (-) True AMCG00019942
TU74813 other upstream 368435 3479782 ~ 3480109 (-) True G59806
TU75113 other upstream 1901097 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 2152567 5263914 ~ 5265925 (-) True G60118

Expression Profile