RNA id: TU74835


Basic Information

Item Value
RNA id TU74835
length 556
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G59825
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3597205 ~ 3597760 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCACGTTGGTCCAGGTTTCCCTGGTGGGATGTCGGCCTGATAGTAGACCTTGAGCTCAGGCACCAAGGCTATAACAGTCTTAATGACCAGGGAGATGATGTCTGACCACACCTTTTTGATGTCTACGCCTTTGGAGGCCAGGCGGTACAGGATGCTGGAGAAGGTCCTCTTGCTGCCCGTGTTGGTGCTGTCTGAATGGACAAAGTTGTCACTGTGGACGTTTAAGGAGTAGTTGGTCAGGTGCATGAAGACGTGGTTCAAGTTCTTTTGGCTGGGCTCCTGGTAGGCCTCGGTGCAGAACCTGGAGAGCCCCTCTTTGGCGATGTAGATCTCCAGTGGCTCCAGGGACTTGACCAGGACATACAGGCGGATGTCGAACTTGAGCTTGTCAATGAGCAGAGGCTTCTGGATGTACTCCTGCACCACGGCGTTCTTGCACTGGGTGCTGCCCACTACCCGGATGTCACTGGGGTCACGAATGAGGTAGATGCCATCGCCCTGGGACCCTCCGTCAGGCTTCACAATGAACGTTGGTTTCCAGGAGGCATCCTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74817 lncRNA downstream 106156 3490718 ~ 3491049 (-) True G59810
TU74466 lncRNA downstream 1021535 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 1376011 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 1391440 2195803 ~ 2205765 (-) False G59485
TU74365 lncRNA downstream 1404658 2192334 ~ 2192547 (-) True G59484
TU74837 lncRNA upstream 42278 3640038 ~ 3642114 (-) True G59827
TU74836 lncRNA upstream 48279 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 73263 3671023 ~ 3675014 (-) True G59852
TU74866 lncRNA upstream 183138 3780898 ~ 3796706 (-) True G59853
TU74878 lncRNA upstream 441755 4039515 ~ 4039918 (-) True G59862
AMCG00019946 mRNA downstream 67569 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019947 mRNA downstream 99459 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019944 mRNA downstream 217608 3340802 ~ 3379597 (-) True AMCG00019944
AMCG00019945 mRNA downstream 269454 3323779 ~ 3327751 (-) True AMCG00019945
AMCG00019938 mRNA downstream 339368 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019950 mRNA upstream 77347 3675107 ~ 3706097 (-) True AMCG00019950
AMCG00019949 mRNA upstream 125135 3722895 ~ 3728526 (-) True AMCG00019949
AMCG00019952 mRNA upstream 509237 4106997 ~ 4133823 (-) True AMCG00019952
AMCG00019953 mRNA upstream 545230 4142990 ~ 4164282 (-) True AMCG00019953
AMCG00019954 mRNA upstream 567039 4164799 ~ 4172609 (-) True AMCG00019954
TU74813 other downstream 117096 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 414139 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 414139 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 485858 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 562870 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 1414684 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 1666154 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 1678902 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 1693830 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 2852862 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile