RNA id: TU74837


Basic Information

Item Value
RNA id TU74837
length 2077
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G59827
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3640038 ~ 3642114 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTACTGTAGTGTAATAGGATGCATGTTTTTCATATAGATTAAGAAATACAGCCTGACTGACGCTTTTGTCCAACAAACAAGCATCAATTTGGTTAGTAAGCATaggtttaacatttaaaacaatgaagtaAAGAAATGTGAAAGTGTATCATTCAAGTACTATGAGCATGCAATAGTAGGTGACATGTGTATCAACTTTATATCAAAGATCTGAAAGGGCACCTGATACAACAGCACTGGGAAATAGTTTCATGGGCCGACCAACACTAGAGACGCGTTTTAATCAGATGCATTTCTTACCAGTTTCATACTGGCGAGAGACACAGATAGCTGAATCATATTTATTAGTGTACAGTACATTAGAGATTGTTTACTATATTTGTAATAAAGGCTTTGCATCAGATGTGTATTTGTTGAAGTGGCACAAAGTACCAAGCGGTTAGTGTAAGTTAGTGATGTGCTTTTATGTCCACCACTACTAAATGGAATTGATTAAAAACACGTAAATGATCAAGACAGACATTTCAGCTCAGTTTAGATTAAATGACAgaattaatgtatatgttaaaGTAAAAGATTTTGTGGTGTCTACACCCCTCCTATTTTACCTGGTATTTACTctgaagatatttatttaatgattccTTAATTTAAAGTATTGATCCAAAAATTGTTGGTCACCACAGCTAAATTTAAAGTGCCTGCTTCTTTACTACGGTCTCCAGGAACGAGCACTTGGGGGAGAAGATATAGCAAGCcgaattatcatttagagagatctaTGAATGCacttcaagatatctcaaaatatttgaagatatcttaatgatttgaagatatctttaaataatttcgagatatctccaaatgacttcctgtatgttggctgagattatcacttcctgtttcctcattcagttaaattagttaacaggaagtgataatcgtgggctacatacaggaagtgatttgcagatatctttaaatgaattaaaggtatctctaaatgatcatttggcttgccatagagaAGGTGCTTTGCAACAGAAACGCACACAAGGTCCATTCGGGTTAGGCCTCTATCTCAGCAGTGCATCTGCATCTCAAGACCAGATCTGAAGTTATTTGATTAAACCTGCTGTgcaaaaaacattcaattacaaCGTGGAAGCAGCCGGGCTCCTACTTTATCTTCTTATAGATACAGCACTCCTCTGGACAACCgacctgacctgacctgacctgTCCAGAGCGGCATACAAAAAGTCTAGTTTTCCCTGATGAATATCTGTGTGCAATTTTATTGGGAAGATAAAATCCAGCATTGTAAAATCAATAATCTCATCCCAAACACGAGTAATAGCAGAATCGTCCACCTTCTGAAGCACTGCTGAGCGTCTTATCGTACGATCTCCTGGGCTGCCGCCTGCGGTCCGAGATACAGATCTGGATTAAATTATCCCTAAACGCGTTGCACGACCACGAGCTCCTCGGCACGAGCGACGTGGTGCATAGCGGTGCAGCCAAAACTAACGTGTTCCTGCCGAAATGGCCAGATCGACGACAGAGTCAAGATTCTGCTCTTTGATTGTTGCCAAAGTGTTTTTGCTttctcattattgttattattattttttttttacacaatgctTAAGATTCGTAGCCCAAACGGACGCTGTTTTGGAAGAGGTTCTGCTTTGGCTGCTGCCGTAATCCAGACCTGTAGCTCAAGCCCTGCCGGTGATATTAGTTTTCTATGCAGTTGCCTTTCTGAGTGGGTCATAAGGATTGATGAGGCCTATAATCCCCAGATTTACTGGCTGCGTCCAGGCACTGGAGCTGATTAGGTGCCGGCGCAGAGAGCCCCGATTGCATTCCTTCGGGTTGGCAGGAGGTGAACGTCGTCCTGCGCTCTGCCACGCCTCGGCTACACAGCAACCGCTTCTCGTCCACACCGTTCAGTTGACTCTCGCACAGGTCCGCCAGGGCCTCGGCCTGCTGGTGCAGTGGGAGGGACTTGAATCTTCGCTGGGCCAAGTAGAGGAAGGCCTCCACAAATGCCTGCAGGCCCATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74835 lncRNA downstream 42278 3597205 ~ 3597760 (-) True G59825
TU74817 lncRNA downstream 148989 3490718 ~ 3491049 (-) True G59810
TU74466 lncRNA downstream 1064368 2574804 ~ 2575670 (-) True G59556
TU74368 lncRNA downstream 1418844 2195803 ~ 2221194 (-) True G59485
TU74366 lncRNA downstream 1434273 2195803 ~ 2205765 (-) False G59485
TU74836 lncRNA upstream 3925 3646039 ~ 3647334 (-) True G59826
TU74865 lncRNA upstream 28909 3671023 ~ 3675014 (-) True G59852
TU74866 lncRNA upstream 138784 3780898 ~ 3796706 (-) True G59853
TU74878 lncRNA upstream 397401 4039515 ~ 4039918 (-) True G59862
TU74898 lncRNA upstream 453236 4095350 ~ 4095984 (-) True G59880
AMCG00019946 mRNA downstream 110402 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019947 mRNA downstream 142292 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019944 mRNA downstream 260441 3340802 ~ 3379597 (-) True AMCG00019944
AMCG00019945 mRNA downstream 312287 3323779 ~ 3327751 (-) True AMCG00019945
AMCG00019938 mRNA downstream 382201 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019950 mRNA upstream 32993 3675107 ~ 3706097 (-) True AMCG00019950
AMCG00019949 mRNA upstream 80781 3722895 ~ 3728526 (-) True AMCG00019949
AMCG00019952 mRNA upstream 464883 4106997 ~ 4133823 (-) True AMCG00019952
AMCG00019953 mRNA upstream 500876 4142990 ~ 4164282 (-) True AMCG00019953
AMCG00019954 mRNA upstream 522685 4164799 ~ 4172609 (-) True AMCG00019954
TU74813 other downstream 159929 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 456972 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 456972 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 528691 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 605703 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 1370330 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 1621800 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 1634548 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 1649476 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 2808508 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile