RNA id: TU74865


Basic Information

Item Value
RNA id TU74865
length 3972
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G59852
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3671023 ~ 3675014 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGATCTTTAGACGGAAAACAAACCAATTGCAGAAAGAACCTTTAAAAGAGTGGTGTGAGACGCACAAGGGCAGAAACGACAACAATAAATGCTTTGCCAGAGCCAACAAGAGTCCCCCTGTGCGTTCCTGATCGGAAACcgttttccattattttcaatggaAGCTCTTGTTCTGATATTGAAGACGGGGAGGTCGACGATGGGAGAATGAGCTCTTTCCCGATCACAGCGCAGTTTGGACCCAAATGCATATACAAACCCACGAACTACACGCTGGCCGCGCTTTATCTCCAGATGAATCTTCTGCTGGGTCTGAGATGTGACTCCTGGAGGAAGTGCGGACCGCTGCACTCTGTCAATACCGATTGAGGCTCGTTCAGGCCCGCGATATAACCAATGTTTACCATTGTCAGTGCACCTGTTCTGGTTTGTTACAACCCTTATGTTTCCCTTAAACTGAGGAGCAGGTTTTAAGAGtttctgtaattaaataacTTCCTGCAGTAAGCCATCccattatgtatgtgtgtgtgtgtatatgtgtatatatatatatccacaatCTCTGGTGACTGAAATCAGTATGATCTTGGACTCTGATTGGCCGAGACAATAGGAAAAGATCTTCAGACTTTGTAAGGAGGAGCTGAAGGTGGAAAGGCTTTGTTTGCTCCACGCGATGAAATTTCTCCATCAAAGGAGTGGAATGTAGTTTCTGAGTCGGGAGTCGAGGGGCGGGATCGTCATTCCTTTCTTTCGCTGCAttaatcagttaaaaaaaaaaaaagaaaatgggctTGTCTTGCGTTTTGACCAAATTTTAAAGCTGAGCCATCACACTCATTAAGgtttttttgctaaatgcatGTCATTTCAGAGGCTTTGCATGTTTAACGATATCCTATCTGACACTTTTTATCCACGAGAGGCGCTTCCTGGTCCTTCTGAACCCGAATGGATGATGTCCTCAGAATGATCCAGCTACTGGTCTCATTAACACACAGAACCGGGCCTGGCAGCGAAGCCGAGACAGACAGTTCAGCCGTCGGGACGGGCTGAGGGGAGGCTGGGCCGGTTCACTCCAACGTCACTTATTTATTGGTCGAATTCTTAGTGTGTCTTTATTTAGGAGAAAAACGCAGGGCCGCATTACTGACCAGATGCCTGCCCTAATAATCTACGTCAGCTGTGTTGCCAAAATAGTTCTGCGACAGTTTTCACTAAACAGGGAACACAGGCTGTAAATATCCCTGTCTTCCACGTGCAGAGTTGTTTAAATGCTTACTCTTTGTTTCAAGCAGCAGTTATTAGTGCTTAACAATACAGCTGCACCTGTATCTCTAGTGTTCACAATAAAGGGAAAGTTGGTTTTaggacacacaggcacacacagctGAAACTGGCATCCAGACaatttacagttatttaaaaaagaaacataatccAATAGTGTTGAcaataatcaaaaatatatgGGTGTGTATGAATGAATCTGTTGAACAAGGGCGCAAATGACATTTtccaaatgtgtaatttaactCTTGTTGAGCagatgtgtgcatgtatgtatacacacataaacacacacatgcacacgcacacacaactcATGTAGCTTACCATGTCTACTGAATGTCAAGATGCTAGTCAAAAAGCTTTTGTTGGCATTTCTTATAATTTGACTTCATCTCCCATTGCTCTGACACCAAACAtttctgcattatatattttgtatatttttgtatttttttcttacctGTAAGATATTTTTTTGCTGCATGTGTCATGCCCAGTGCTACATATAGTAGCACAACAGGTATAGTTTGTTTTAAGTTGTCAATGGTAAGGAAGAAGCTACTTCCACTATATAATTTGCTGCATACTTTGTATGTgcttaaatataaagaaattaGTGTATTTAGAGGCAAGATGCCTCGctgatgtaaataaaatgttcacaatatttttacctaatgtgatttaaaaaaaaaaaaaacgtttttttctttttgtaaatgttcCTTGTGTTTAATTCTACTGTACTGATATCACATGAATATTGTAAATAGTTAAACTGTTATTCCTGGTGCTGCTTCCTTAGACAGTTTCAGCTTCATTTTACTGCTGTTTagtccttttttttaatgcaggtATTCTCTTTTGAAAGCAAAACACTGACCGCGTGAgcaaaaatatgatatttatgTCACTCATGTCAGGTATTTTGTCTGGCCCAGGAAACTAATGAAATCCTCTCTCAGCAAGCTCTCCAGATCCAGTACTGTGAGCAGAATCGTAAAGAGACGCAAGCACAAATCCCCACTGACCCTCAGTCCTCTTCACCCATGCACCTCTTCAAAAGGGAGCTCTGTGCATTTCTGTCTCGATTGGTTGACTTGGCAAACGTTTCTTTCTGCATCTTGTTCGCTGCCCATCATATCACCAGTAGTTATTGTCTGAAACAGCAGCTCGTGGCGCTAACACGGTTTTTGAGACCATCTGCTTATTGCAGTCGGGTCCTGAATTTGAACAGGACCCTCAGCACAGTCTGGTAGGAATCTGGTCTTGGATTGACCAACGTGTGTTTAAATGCTTTTCACCAGGCCGTGTCGTACAGAGCTGCTGAGAATCAATTAATTTTCCTCTCAGATCTGCAACTCGCACATCCTTGAGGTTCCACACCTCGGAAACGCCTGCAGAGACCTGGGCTGCTTCTGGCCTCTGATATTGACTCGTGTCCAGGGGTTGGAAggtgaatattttattatcttacCTTATAAAGGCTGTCAGTGTTTTGCTTTGACAAAGGGATACTCCTGTAAAGCGACTCAAACCACTATATTGGGCAGAAATCACTGCGTTCTCGAAGTCTGTGGTTCTGTCCTCTCGCTGTCTGTACCAATGTTCCAGTCGTACAGAagaaattatttgtaattcactAGTCTAGCACGACACCACGCAGTTTCAGGAGCGGGTATATCTGCTAGTCAGTCTACTAATACAGTAGATTTCATAAGAGGGaagaattaaatttaaattaaatgtattgattgaggACTGGATCAATTTAAGCCAATTAGCGTACTTTAGTGATTTTAAATCGatcacttattttaattgatacaaaaaaatccCACGCAGAAGAACAATCAATAGAGTATCTGGATTTAATATGCAATTGTTGTACAGGAACCAAACAATAATTATacgataaaaataaaatattgcaaattTCTCTTTACTGAAATTCCCACAAGTGGTCTTATTTTACAGTCTTAACATGACTGCTAactacagagaaagaaaaacattgcttcttttatgcatttttgattcaaaaagctttgtaaaataaatattatcagattcaatttacagatttttatatatatatatatatatatatatatatatatataatttcaagccattttaatttatttaagttcCATGAGTCATCCCAAATTAAGTAAAACAACAAACGATTAAATGTCTAAGTGAATTAAGGTGCCCATTGTTGAAGAATAAAGGTGTTTACTATTTAAGATAAAAAGGTAAAATAGTAGGGGGTAAAAGATCCAACATACACGTCAGTGCGTGTGGAGATATACTCTCTCCCTGACTTCTGGTGTTGCAAATAACTGGTTTCTAAAAAGctgttgtatgttttataatcTCTTCTAGAGTCACTTTTGTAAGTATGTTAAAAGTAAAGTATTCGCTGGACTCGCTTCAGTATACgacaacgacaacaaaaaaGACATGTAATAATGTACAGAGGAAGTTGTTCGTGTTTAAGAAAATGTGGCTGTGCAATTTATGTACATTTGCAACTAGaattattaaagttttatttagCTATTTTAAGTTTCCGCCTCGTGCCGTttttcatgctgtcagcgcctCGTTTCTCCTAATGGCACGAGCGTCAAACATCCTGCTggacagagagaaaaggagcGTTTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74836 lncRNA downstream 23689 3646039 ~ 3647334 (-) True G59826
TU74837 lncRNA downstream 28909 3640038 ~ 3642114 (-) True G59827
TU74835 lncRNA downstream 73263 3597205 ~ 3597760 (-) True G59825
TU74817 lncRNA downstream 179974 3490718 ~ 3491049 (-) True G59810
TU74466 lncRNA downstream 1095353 2574804 ~ 2575670 (-) True G59556
TU74866 lncRNA upstream 105884 3780898 ~ 3796706 (-) True G59853
TU74878 lncRNA upstream 364501 4039515 ~ 4039918 (-) True G59862
TU74898 lncRNA upstream 420336 4095350 ~ 4095984 (-) True G59880
TU74938 lncRNA upstream 633662 4308676 ~ 4308945 (-) True G59907
TU74954 lncRNA upstream 946963 4621977 ~ 4622357 (-) True G59922
AMCG00019946 mRNA downstream 141387 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019947 mRNA downstream 173277 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019944 mRNA downstream 291426 3340802 ~ 3379597 (-) True AMCG00019944
AMCG00019945 mRNA downstream 343272 3323779 ~ 3327751 (-) True AMCG00019945
AMCG00019938 mRNA downstream 413186 3255212 ~ 3257837 (-) True AMCG00019938
AMCG00019950 mRNA upstream 93 3675107 ~ 3706097 (-) True AMCG00019950
AMCG00019949 mRNA upstream 47881 3722895 ~ 3728526 (-) True AMCG00019949
AMCG00019952 mRNA upstream 431983 4106997 ~ 4133823 (-) True AMCG00019952
AMCG00019953 mRNA upstream 467976 4142990 ~ 4164282 (-) True AMCG00019953
AMCG00019954 mRNA upstream 489785 4164799 ~ 4172609 (-) True AMCG00019954
TU74813 other downstream 190914 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 487957 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 487957 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 559676 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 636688 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 1337430 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 1588900 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 1601648 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 1616576 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 2775608 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU412896 True 302 lncRNA 0.48 1 CI01000154 707653 ~ 707954 (-)
rainbow trout (Oncorhynchus mykiss) TU429470 True 3813 lncRNA 0.43 2 NC_048569.1 20762944 ~ 20766785 (-)
mexican tetra (Astyanax mexicanus) TU412896 True 1264 lncRNA 0.37 2 NW_019172831.1 78822 ~ 101371 (-)