RNA id: TU74898


Basic Information

Item Value
RNA id TU74898
length 635
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G59880
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4095350 ~ 4095984 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACATCCAGAGTCATTAGAAACACAAGCATCTGAAGATTTTATTTAGACTTTACAagtaaaaaattacaaaatcttCAAACTTCAAAAATCTCTCTAAAGTGCAATGGCTGTGCACGTCTTTATGGAGTGAACAGCCACCACACTGACTGCAGCCACTGTACCGTGACAACCAGATCATTGCATATGAACTAGTAAAaggttgtaaaaataaaaagcttggTACTGACCCTTCCCCCCCACCTTTCCCTTGCATAGGCCACCAGATAGTCATACATCAGCTTTATAGAAGTTACTGTGGATCTCTGTGCATCGGTTTTGTAGTGTTTTCATTggtcatttaattgttttgtagtatgtatgttttgtggaGCTCTGAAGGTTTATTTCACATCCTGGTTTTTCAGGCTATATTACTAAGCTCGTGGCCATTTGAATAGGCAAATTGTGCAAACAAAACctgatgttaaaatgttaaaaatataacctACAGAAATGGTCGGGGGGTTATTCCAcacagttaaatataaatgtgtaaagctgaactacttttaaaaactgaagtCTTCCAAACCGTCAAATTTTCCAAAGCATAACATAAAATCCACtgtgtaaacacatttttgcccgtttttgt

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74878 lncRNA downstream 55432 4039515 ~ 4039918 (-) True G59862
TU74866 lncRNA downstream 298644 3780898 ~ 3796706 (-) True G59853
TU74865 lncRNA downstream 420336 3671023 ~ 3675014 (-) True G59852
TU74836 lncRNA downstream 448016 3646039 ~ 3647334 (-) True G59826
TU74837 lncRNA downstream 453236 3640038 ~ 3642114 (-) True G59827
TU74938 lncRNA upstream 212692 4308676 ~ 4308945 (-) True G59907
TU74954 lncRNA upstream 525993 4621977 ~ 4622357 (-) True G59922
TU74974 lncRNA upstream 552038 4648022 ~ 4651002 (-) True G59932
TU74981 lncRNA upstream 572366 4668350 ~ 4668869 (-) True G59938
TU74982 lncRNA upstream 572974 4668958 ~ 4669158 (-) True G59939
AMCG00019949 mRNA downstream 366824 3722895 ~ 3728526 (-) True AMCG00019949
AMCG00019950 mRNA downstream 389253 3675107 ~ 3706097 (-) True AMCG00019950
AMCG00019946 mRNA downstream 565714 3523288 ~ 3529636 (-) True AMCG00019946
AMCG00019947 mRNA downstream 597604 3496276 ~ 3497746 (-) True AMCG00019947
AMCG00019944 mRNA downstream 715753 3340802 ~ 3379597 (-) True AMCG00019944
AMCG00019952 mRNA upstream 11013 4106997 ~ 4133823 (-) True AMCG00019952
AMCG00019953 mRNA upstream 47006 4142990 ~ 4164282 (-) True AMCG00019953
AMCG00019954 mRNA upstream 68815 4164799 ~ 4172609 (-) True AMCG00019954
AMCG00019955 mRNA upstream 89321 4185305 ~ 4195180 (-) True AMCG00019955
AMCG00019956 mRNA upstream 159288 4255272 ~ 4263577 (-) True AMCG00019956
TU74813 other downstream 615241 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 912284 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 912284 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 984003 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 1061015 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 916460 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 1167930 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 1180678 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 1195606 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 2354638 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile