RNA id: TU74954


Basic Information

Item Value
RNA id TU74954
length 381
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G59922
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4621977 ~ 4622357 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATAAACTTGAACCGAAACAGATCATGAAAAACAGGCATGGAGGAAAGATGGGATCGTCGGTTTATGGGAGATATGGACATCATCATTAAAGGGGGAAATTAAATAAGCATATGGTGAACATACAATGAAATAagcattaaatattgtaaaagccTTATCAAATACCGCATATTAACAATGTCATTAACACAAACTGTTATTACATGTCTATTACTTTCTTCACCACCTTTTAAATTGGAGACCTCAAATCCCTGGTTATCTACTGAGTGCACGGCTAGATAAATCGAATAATCACTTTCAATATTAGAATAAAATACTTCCGATACGAAGTGCAAATGAAGGAGTAACATGTGGGCTGTATAAACACACGCAGAAGAAGG

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74938 lncRNA downstream 313032 4308676 ~ 4308945 (-) True G59907
TU74898 lncRNA downstream 525993 4095350 ~ 4095984 (-) True G59880
TU74878 lncRNA downstream 582059 4039515 ~ 4039918 (-) True G59862
TU74866 lncRNA downstream 825271 3780898 ~ 3796706 (-) True G59853
TU74865 lncRNA downstream 946963 3671023 ~ 3675014 (-) True G59852
TU74974 lncRNA upstream 25665 4648022 ~ 4651002 (-) True G59932
TU74981 lncRNA upstream 45993 4668350 ~ 4668869 (-) True G59938
TU74982 lncRNA upstream 46601 4668958 ~ 4669158 (-) True G59939
TU74983 lncRNA upstream 49423 4671780 ~ 4672168 (-) True G59940
TU74984 lncRNA upstream 50927 4673284 ~ 4673609 (-) True G59941
AMCG00019956 mRNA downstream 358400 4255272 ~ 4263577 (-) True AMCG00019956
AMCG00019955 mRNA downstream 426797 4185305 ~ 4195180 (-) True AMCG00019955
AMCG00019954 mRNA downstream 449368 4164799 ~ 4172609 (-) True AMCG00019954
AMCG00019953 mRNA downstream 457695 4142990 ~ 4164282 (-) True AMCG00019953
AMCG00019952 mRNA downstream 488154 4106997 ~ 4133823 (-) True AMCG00019952
AMCG00019960 mRNA upstream 60 4622417 ~ 4627869 (-) True AMCG00019960
AMCG00019964 mRNA upstream 133167 4755524 ~ 4766859 (-) True AMCG00019964
AMCG00019968 mRNA upstream 253229 4875586 ~ 4886898 (-) True AMCG00019968
AMCG00019970 mRNA upstream 276583 4898940 ~ 4908555 (-) True AMCG00019970
AMCG00019972 mRNA upstream 308146 4930503 ~ 4940565 (-) True AMCG00019972
TU74813 other downstream 1141868 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 1438911 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 1438911 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 1510630 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 1587642 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 390087 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 641557 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 654305 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 669233 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1828265 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile