RNA id: TU75100


Basic Information

Item Value
RNA id TU75100
length 1266
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G60034
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4985681 ~ 4989055 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cggacatctgcgctacacgaaccgCAGTTGTGTCAGTGGTTCATCTGGTGTTGGTGCACAGACTAATCCCTGATACTCACAAACACGTCTGCATGCACTAAGGGCAACATGTACCGTCAATCCGaacatcaaacaaataaaactacatttcccagcagACATTTAATCTGGTGCGTTACAAGAGTGGCGGTCCAATCAGAATATACCGGAAGTTATGTAAAATCAACGCGTTTCCACAGGAAGTGACGCACGCAACATGGCGTCAGGAGTGGATCAAGTCGCTGGGATGGGCCTGGTTGGCTTCAGTCTGATGCTATTCACCTATTACACAATCTGGGTTATAATTTTGccCTTTGTGGACAGTGACCATGTGATCCACAGGTATTTCCTGCCCCGGGAATATTCTGTAATATTGCCGGGTGTTGCTGCCTTGGTTTTAGTGCTGTTTGTAGggACCTTTATTGGTGTTGTTACATGGAAGAACAGAAAACCCAAGAAACTGGATTAGAAGGAACCGGGACAGTTGTGCTCCTGCTCTGTGGCCCAGATCTCCAAGACAGGACTTCAGGCACTGGGGCACCTGATGGGTAGAGCTTAACCTCACAAACCTCTTTGCCCATTCCAGGGATGAAATCTCCATTGCAAATTTGAGCCGTGTCAGAATTCCCTTGATGTAAATATTATAACCCTGGTCCAGAGAACACAGGTTTGTGTGGTGAAGACAGCTGTGTAGGTGGTTTACATTCCTATGCATGTTGCCTGCACTTCTGCAGCGCTATAGTAAAGCACAGCACCTGCAGTCACTGTGTACATGGTTTTATCCTGCTAAGTGTGCCCTGTCATTAGCACCAAAATAATGCAGGCAACTTGTGCTATCGTTCAAGAGTTCATGTAACCATAGGTTGTTAGGAATTTAAAAATAGGTGAATTAAGGGACATGCATTTTTAAGTCTTACAGTTGCCACTAGAGGGCTTaagaaaactgttaaaatgcTTTAACTACAAATTCCATTGAAACATGTAATagaataatctttattttatatagcgcctttcatgTTAGCACATGCCAAAGCACTTAGATAGCTACTGAAATAGCTACGCATCAGTATgtaagtatatatgtatatttacatgcacacatatactTATTGGTAAACAGCTGTTATAATAACatcttgtatatatttatgccCAGCATGTGGTTAACTTTGAGACATTGCTTTCCGGTGTTAAAAggatataataaaatatcagaCATTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75029 lncRNA downstream 136885 4844797 ~ 4848796 (-) True G59979
TU75008 lncRNA downstream 185412 4796726 ~ 4800269 (-) True G59963
TU75003 lncRNA downstream 230489 4750487 ~ 4755192 (-) True G59958
TU74984 lncRNA downstream 312072 4673284 ~ 4673609 (-) True G59941
TU74983 lncRNA downstream 313513 4671780 ~ 4672168 (-) True G59940
TU75172 lncRNA upstream 129296 5118351 ~ 5160697 (-) True G60089
TU75169 lncRNA upstream 164003 5153058 ~ 5157193 (-) False G60088
TU75166 lncRNA upstream 165953 5155008 ~ 5157193 (-) True G60088
TU75185 lncRNA upstream 172951 5162006 ~ 5162521 (-) True G60099
TU75186 lncRNA upstream 174709 5163764 ~ 5163995 (-) True G60100
AMCG00019971 mRNA downstream 2470 4969190 ~ 4983211 (-) True AMCG00019971
AMCG00019972 mRNA downstream 45116 4930503 ~ 4940565 (-) True AMCG00019972
AMCG00019970 mRNA downstream 77126 4898940 ~ 4908555 (-) True AMCG00019970
AMCG00019968 mRNA downstream 98783 4875586 ~ 4886898 (-) True AMCG00019968
AMCG00019964 mRNA downstream 218822 4755524 ~ 4766859 (-) True AMCG00019964
AMCG00019975 mRNA upstream 3581 4992636 ~ 5005983 (-) True AMCG00019975
AMCG00019976 mRNA upstream 71436 5060491 ~ 5061512 (-) False AMCG00019976
AMCG00019974 mRNA upstream 76585 5065640 ~ 5069039 (-) True AMCG00019974
AMCG00019983 mRNA upstream 142991 5132046 ~ 5153053 (-) True AMCG00019983
AMCG00019982 mRNA upstream 169304 5158359 ~ 5159320 (-) True AMCG00019982
TU74813 other downstream 1505572 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 1802615 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 1802615 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 1874334 3107801 ~ 3111347 (-) True G59720
TU74667 other downstream 1951346 3031856 ~ 3034335 (-) True G59712
TU75113 other upstream 23389 5012444 ~ 5061277 (-) True AMCG00019976
TU75216 other upstream 274859 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 287607 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 302535 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1461567 6450622 ~ 6453598 (-) False AMCG00020017

Expression Profile