RNA id: TU75172



Basic Information


Item Value
RNA id TU75172
length 1132
lncRNA type read_through
GC content 0.48
exon number 2
gene id G60089
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5118351 ~ 5160697 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGTCAATTCAAATTGTGGGGCTTCCCAAAATACACCCACTGGGTAGCCTATGTGTGATCCGTCGCCCTTTTGTATATCTGCATTGTGTCGCTCATTTTCTGGGCTTTTTTATTACAGGCAACAAGAAGTGCTGTACTGTCTCCATATCAAACCCGATGCTCTCTTACCGAGTCCTGCTCCGTCTGACGCGACCTCCTCCACACAGAGTCAACCCCCGCCAGCTCCACACTCTCGTCCGTAAACATGTCTACATCAGCGGGGAACAGATACTATAATACAACACCTAATATGTCAGGTTGTATCTACCGCGCCTATGAGCAGCGCTGGAGTAAAACCTATTGTTTGATGGAGGTGAAGAAATACTTCACATCCACTTCAGTCGACACTTCTCGTTTGCatgatattgtgtgtgtttaacaatGTCAAGCGTCTTCATTTAGCTGAGACAATGTACCTGCTGTTACCGCTAGTAAACAGAAACCTACAACGAATGCGCCTAACGTATTCCGCTACCTGAACCAACACATCCTAGTTTTAAATGAACGACATTGTTGAATAAAGAGCACTACATAGTCCAACCGAATATCTTAGAAATGTGATacgatattattattattattattattattattattattattattatataccaCTTGCAGATTGTTTAAGTCGGGTAAGTCTTTCTCCCAGTATTCAAAATCAACTATACCTTCATTTTCCCACTCACACAGGGTCTCTTTGTCGCTCCGCTTCACGCCGCCTATGAACTCCGCAGGCACGGGCTCCATCCGCTGGTCAAGCCGCTGCTCGGAGCTGGAGTCCCGGCTGGCCGCCTCCGCCGCGGCCCGACAGTGAGCCCGTAACTCCGCCGGGTCCAACTGAGACAGCTCGGTCACAAAGCGGCTCCTCTGGTCGGCGCTCAGCTCCGGCCAGAACCGGAGCAGATGGGACTGCCCAGCCAAGTCCAGACGGGACCTCAGGTCTTCCAGGGAGCTCATGTTGCGGGACTAATATGCATCAAGGTGCGCAGTGACTGTAGACACAATATACACAGTTTGTTTGTAACAATGCATGCATGCAAGAATGGAGAAGGCGGTTATAAATGCGTGTCATGGAAGGTGTCGCTCACCGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75100 lncRNA downstream 129296 4985681 ~ 4989055 (-) True G60034
TU75029 lncRNA downstream 269555 4844797 ~ 4848796 (-) True G59979
TU75008 lncRNA downstream 318082 4796726 ~ 4800269 (-) True G59963
TU75003 lncRNA downstream 363159 4750487 ~ 4755192 (-) True G59958
TU74984 lncRNA downstream 444742 4673284 ~ 4673609 (-) True G59941
TU75185 lncRNA upstream 1309 5162006 ~ 5162521 (-) True G60099
TU75186 lncRNA upstream 3067 5163764 ~ 5163995 (-) True G60100
TU75187 lncRNA upstream 4570 5165267 ~ 5165488 (-) True G60101
TU75188 lncRNA upstream 5662 5166359 ~ 5167290 (-) True G60102
TU75287 lncRNA upstream 310622 5471319 ~ 5523619 (-) True G60179
AMCG00019974 mRNA downstream 49312 5065640 ~ 5069039 (-) True AMCG00019974
AMCG00019976 mRNA downstream 56839 5060491 ~ 5061512 (-) False AMCG00019976
AMCG00019975 mRNA downstream 112368 4992636 ~ 5005983 (-) True AMCG00019975
AMCG00019971 mRNA downstream 135140 4969190 ~ 4983211 (-) True AMCG00019971
AMCG00019972 mRNA downstream 177786 4930503 ~ 4940565 (-) True AMCG00019972
AMCG00019985 mRNA upstream 6669 5167366 ~ 5206880 (-) True AMCG00019985
AMCG00019984 mRNA upstream 47076 5207773 ~ 5230138 (-) True AMCG00019984
AMCG00019987 mRNA upstream 73533 5234230 ~ 5234454 (-) True AMCG00019987
AMCG00019993 mRNA upstream 115967 5276664 ~ 5277926 (-) False AMCG00019993
AMCG00019992 mRNA upstream 130895 5291592 ~ 5292616 (-) True AMCG00019992
TU75113 other downstream 57074 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 1638242 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 1935285 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 1935285 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 2007004 3107801 ~ 3111347 (-) True G59720
TU75216 other upstream 103217 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 115965 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 130893 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1289925 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 1302851 6463548 ~ 6466586 (-) False G60348

Expression Profile