RNA id: TU75185


Basic Information

Item Value
RNA id TU75185
length 516
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G60099
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5162006 ~ 5162521 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTCATTGTGTTGTTTCTATAATGCTGGCTCAACAAAGACCACAATATATTTGGCTTTTTCATAATACCACATTTTTAGATTGATATTGCTGATTGATATAAACCAGTCCCATATTAATATCCAGTTCTCCACGTCACTTTTAGGAGTCTGTATACTATTTTGGCAGCTATAATTGTATTACTCCAAAGTACAAATTGTGacactttatttcaaaatgttatttcatgGTCAACTTATGATTTCCCTTTCCTGTCTCACCGTCTGGGTTTCGTCCTCCCAGTTCACATGGTAGCCAATGAACGCGTAGCTCCTGGCCGTCTTCCTGATCTCCGCGACCATCACGTCCTCCACCCGCTGCAGGAACGCGGCCAGGCCCGGGGCATCGCTCCCAGACTCCGCACCACAGCCCTGCAACGGGCACGTCTGCGACTCGGTCTGGGTGCCCATCTCTGACTTTTGACTGGTCTGCACGCCTGCCTGCGTGGTCTTCAGTGGTTTTGTCTGACAGCTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75172 lncRNA downstream 1309 5118351 ~ 5160697 (-) True G60089
TU75169 lncRNA downstream 4813 5153058 ~ 5157193 (-) False G60088
TU75166 lncRNA downstream 4813 5155008 ~ 5157193 (-) True G60088
TU75100 lncRNA downstream 172951 4985681 ~ 4989055 (-) True G60034
TU75029 lncRNA downstream 313210 4844797 ~ 4848796 (-) True G59979
TU75186 lncRNA upstream 1243 5163764 ~ 5163995 (-) True G60100
TU75187 lncRNA upstream 2746 5165267 ~ 5165488 (-) True G60101
TU75188 lncRNA upstream 3838 5166359 ~ 5167290 (-) True G60102
TU75287 lncRNA upstream 308798 5471319 ~ 5523619 (-) True G60179
TU75342 lncRNA upstream 828424 5990945 ~ 5991184 (-) True G60230
AMCG00019982 mRNA downstream 2686 5158359 ~ 5159320 (-) True AMCG00019982
AMCG00019983 mRNA downstream 8953 5132046 ~ 5153053 (-) True AMCG00019983
AMCG00019974 mRNA downstream 92967 5065640 ~ 5069039 (-) True AMCG00019974
AMCG00019976 mRNA downstream 100494 5060491 ~ 5061512 (-) False AMCG00019976
AMCG00019975 mRNA downstream 156023 4992636 ~ 5005983 (-) True AMCG00019975
AMCG00019985 mRNA upstream 4845 5167366 ~ 5206880 (-) True AMCG00019985
AMCG00019984 mRNA upstream 45252 5207773 ~ 5230138 (-) True AMCG00019984
AMCG00019987 mRNA upstream 71709 5234230 ~ 5234454 (-) True AMCG00019987
AMCG00019993 mRNA upstream 114143 5276664 ~ 5277926 (-) False AMCG00019993
AMCG00019992 mRNA upstream 129071 5291592 ~ 5292616 (-) True AMCG00019992
TU75113 other downstream 100729 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 1681897 3479782 ~ 3480109 (-) True G59806
TU74745 other downstream 1978940 3166237 ~ 3183066 (-) False AMCG00019942
TU74744 other downstream 1978940 3178041 ~ 3183066 (-) True AMCG00019942
TU74676 other downstream 2050659 3107801 ~ 3111347 (-) True G59720
TU75216 other upstream 101393 5263914 ~ 5265925 (-) True G60118
TU75221 other upstream 114141 5276662 ~ 5278291 (-) True AMCG00019993
TU75228 other upstream 129069 5291590 ~ 5292673 (-) False AMCG00019992
TU75483 other upstream 1288101 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 1301027 6463548 ~ 6466586 (-) False G60348

Expression Profile