RNA id: TU75347


Basic Information

Item Value
RNA id TU75347
length 4101
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G60235
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6036565 ~ 6040665 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttataatacataaatactttgCTTAGTATTTCAAAAaacttttcttaaaacaaacattttacagacaTACTAGAATAACTTGTTTGAggtttacatacatacacaaaataaaccatatacaaaaataacagtgGCATTAAAAAGCAAAGGACAAAATGCAGGCACAGTTGCATATTATAATAGACAGTTCTGTATACATGTAAAAACGACTGCTTTGACCAATACTACAAGAGAACCTTGAAAATAATTCTGACCAAAAATACAATCTGCACAATGTTTGTAAAGGTAAAATTGCATCTAAGTAACTgaattttacattataataGAACCTATACAATGTCCCTCAGTGTATTCAATAATGTCCCAGCTGTAGCTAATACCAAACAGTGAAATCCAGACATGTCGTGCCCCTCAGTCACTCTGTACCATCATATCGCTCTTCACAGAAACGCTACAATGGGACGAGCAGGGTGCCTGGGGAAATTACGACCAGGGGTTTCAGGAAGCGCAACCTAGGTATGTGACATTTTAGGTGCCTCTGCACTTTTGCAGCAATGGGTTTAAGGTCACTTATTAAAGCAATGCATGTTCACAATGTATACTAGTAGATATTGGACTTGTTGTGGGACATTGCTTTGGTGATATGGGGGAACTGTCAATCATAAAGCCATGGTTGAAAGGTTCCTACAAAACCAACTGTCCAACTGTCAATGagtctaaaataatgtaaaacatgtttttgtaactGCACTACTGTATCTCCCTAAGGACATTCTTGTAGTAATGGTTAAGCACACTAGACactcaatcagtcaatcaatctgTGATACTATCTATCAAATTggttggatttgttttttctttggcaAAATAGTGAACATTGCATGTTTTGGTACAAAGTCCTAGAACCCTTTACATaccatgtttaaaacaatacagaaagaaaacacatacaagaaaacaagtagacatttaaatatgtgtaaataataattaaaatcaacaaaattatgaatacaaatacatttaaaaatcctattgaggaaaataaataattcctttCCCAGACAGTTAACCATATTTGTCCAGTGTCAGCTTCTTCTTGTCAGCTATAGGACTATATATACTTCAAAGGGCTGGACATTCAGCACCAGCACTATGCTGTGACCATGACACTGTTTGATGTATGAAGAAGAAAGGGAAACAGACTCGGGAGCTGCTAAAACGAGCTGCCAGAGATGCTTTTTAATCGGCTATATTACACAGGAACTCAGGAAGATCATGTTTGGTGCCAATAATTATGTTCCCACCAGTTTTATTCAGGCCATCTGAAATACCAGATTTCTTATAATAATTTCCCCACAGTTTTAGCTGTTACAAAACAAGGAGGGTAAGAGATTGTAAGTACAGGCAATTATAGCACAACCCTAATCAAAACCAACTGTTCACCACCACTGGCCAAAAAACCTGTTGATATCTGGGTTACTGGACTGAATCCAGTCTTAAGTTGccaaataaatgtcaaacatAATGGAAGCACAGACGAAATGCATGAACTTAAGTTAACAGGATATGAAGTACTTACATAACTAGGCTGTGTGTTATTTGATCATTATCAGTCCTGCTCAATTTACTTAAGCATTCTCCCCTCCCAGCCTTCTGAGAATGATGCAACTGTACACTATACAAGTTAGACTATAACTCCTTATTCATTTTTGAGTAACTGCCAATGCACTCAGAAGGCAGATCGCAAAATACACATGGTAGGCCATGAACCaggtctctctgtctcacaatTATACGCCATCCTCTTGGCACAGAATGAGTTGGTACAAGTTGCTTTGAAAACTACTTTAATATGTTATTAACAACTCTTGAAGAAACTTGTGgctatgcaaatattttatttttaagatttcatttttCCTCCCTCTGCATAGAATAGTAATGTATGCTTTAAAGGTCAAATGAGTATCAAAtggaaaaagataaaaagaaatgtaagctTACATGTAATTTTCCACATGCTATTGTAACCCATGTTGTttttgcaacaaatggtgttCTAAATGCATTGGATTAATGAATACAGAATCACACTCAGAGGTGTAAACGGAATGACTTAATTTAATACCCTAGCCAGCACTATTACTCATAGCTACTCCAGAAGCCAAGCACAGTTGCTGGCTCACTGACATTGCAAACCAAAGAACTGTAAATAGATAATTTACTTATAGATTGTAGCTCCCAGGGTGGATATTGTTACTGGCATATCTCTAAATCCCTCAAACTCAGCTGCTGTGTTTTGCAATAAAGGGATACTAAGGACATCAGACAACTTGCATGTCAGTTTTAAAACTAGTTTCCACTAGGTAGAGATTtgacatttaataattacattctgGGGACAAAGGCAAGAAACATTCAGCCAATAGAAGTTTTGTTGCTGCTAAGGAAAATggtcaaaacatttttacatcCATCGGTAAATTATCAATTCCTTAAAACCAGGTAAAATGCTACATCAGATGTAGTTTTCCATTCAGCTCAAGCATGCATTGCAAAATTTGAGTGAAACCCTGAGGGCACCATATCTATCAAATATCAGAGTCACTAGTTTACAGAAAGAAGAGATGAGAGGTgatatttatccatttatttcaaagcattttcatGAATAAGAATAGTGAAGACACAGAGGAAGTAGCTTACTGCCTGGTTCAGATCAACAGTTGCTTTACATTGCAGTCATATTGCATTTCTCCAAGGCTACAAAATGCATTGTCATTTGCATTCATTTCTTTCGAAAAAGCTTGGCCAAATgggtacaaaaatgtaaaagataaaaaaaataaagcttggAACAACTTTTAATCTGTGTCTTCAGATCCATAAATAACAGTAACtgaacaaatacaatgaaattgtacattaacattcaaaacataaaaaagccaatGGCAGCAGTTTTATCTTCTATGAGAGTAACAGCTTCATTTCTTTGTGTCTGCAGTGTGTAAATGAGAGACAATGAAGAGCCCTACATAACTATTACTGCACGGAGTACAGACTATCAGAGCAGTTTCAACATTCTTACGTCGTAAAGTCTTACTtcactaaaaatacattataataggACAACAGAGAAAAGACAAAATTAGAGAAGAGTAAATTTCAGAGCAGATAGACATGAAAAGCAGCTGGTGTTGGTTTGTAGAGAGTATATCCTTACAGCTGGTGTACAGGCTGACCATCCATCCAAATTCAGGAATGACCAAATTGATCTCATTACAATCTTGTAGGCTTTGGAGTGTGGGGCCTCCTTGTCAGGAGAATAtgcaaaaacaatcaatatttcTTAAGATATCATTAAAGGAACATCTGTAACAGTAGTTACAGAGTTGTGATCTCATTACACATATAGGTATCATTAAACATTCAATCAGCGTTTACAAAAGGACAACTCATGTGCTTGTGTGGTGAAATGTCCTTttggctgtgttttttgttagtaACTGTGGTAGTCATTCTACAATGGAAGGATAAGGAAGACACTTAGATGTGAGGAAGTTCAAAGGGAAAAAATTAAGGcccacattttgttaaacacagAATACACGACGTGTTGAATGTAGAATGTAATGACAGCATGAACTCCCTGAAAGTTGTCCTGCTTTGGGACAGCCATGCTCCTGTACCATAGACAGGTTAGAAGTTTAATCTGTgtacaaaatacttttcataCTGAactcttttgtatattttactgaTTCGAACCTCTCATAAGTCTCCCATTTATTAACTACAATGGAACTGAACCACACTTGGTATACAAgtattcagtattttctttGGTGATTATTTTCAGATTACCTTTCTGCCTTTACTGGAGTCTGAAAATTTGCTTTAGCAATAAATTATGTATCTTTCTCCTGAATTAAACCATAGTGATTACAAGGCAACATGCTAGATACACACGGACAATCTTTCTCAAATGTGTTATGTGTTAAAATATTACACCATGGAAATCAATACCATGAAAACTGCATGAATTTGGAATTTGGAGGAACTAGCACATCACAAGAAGATAAAAATATCT

Function

GO:

id name namespace
GO:0005952 cAMP-dependent protein kinase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75343 lncRNA downstream 40877 5995469 ~ 5995688 (-) True G60231
TU75342 lncRNA downstream 45381 5990945 ~ 5991184 (-) True G60230
TU75287 lncRNA downstream 512946 5471319 ~ 5523619 (-) True G60179
TU75188 lncRNA downstream 869275 5166359 ~ 5167290 (-) True G60102
TU75187 lncRNA downstream 871077 5165267 ~ 5165488 (-) True G60101
TU75349 lncRNA upstream 14884 6055549 ~ 6055822 (-) True G60237
TU75364 lncRNA upstream 38944 6079609 ~ 6079871 (-) True G60252
TU75370 lncRNA upstream 58780 6099445 ~ 6099911 (-) True G60258
TU75374 lncRNA upstream 70684 6111349 ~ 6114148 (-) True G60262
TU75383 lncRNA upstream 114253 6154918 ~ 6155224 (-) True G60271
AMCG00019997 mRNA downstream 249109 5769073 ~ 5787456 (-) True AMCG00019997
AMCG00019995 mRNA downstream 326702 5688531 ~ 5709863 (-) True AMCG00019995
AMCG00019996 mRNA downstream 421109 5604443 ~ 5615456 (-) True AMCG00019996
AMCG00019994 mRNA downstream 461879 5568518 ~ 5574686 (-) True AMCG00019994
AMCG00019990 mRNA downstream 655601 5375866 ~ 5380964 (-) True AMCG00019990
AMCG00020002 mRNA upstream 122285 6162950 ~ 6172474 (-) False AMCG00020002
AMCG00020003 mRNA upstream 137591 6178256 ~ 6181661 (-) True AMCG00020003
AMCG00020005 mRNA upstream 145566 6186231 ~ 6200034 (-) True AMCG00020005
AMCG00020012 mRNA upstream 266868 6307533 ~ 6328630 (-) True AMCG00020012
AMCG00020013 mRNA upstream 288343 6329008 ~ 6333367 (-) True AMCG00020013
TU75228 other downstream 743892 5291590 ~ 5292673 (-) False AMCG00019992
TU75221 other downstream 758274 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 770640 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 975288 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 2556456 3479782 ~ 3480109 (-) True G59806
TU75483 other upstream 409957 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 422883 6463548 ~ 6466586 (-) False G60348
TU75492 other upstream 422883 6463548 ~ 6466586 (-) False G60348
TU75494 other upstream 427623 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 1400138 7440803 ~ 7562592 (-) True G60516

Expression Profile