RNA id: TU75374


Basic Information

Item Value
RNA id TU75374
length 2800
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G60262
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6111349 ~ 6114148 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATCTTCCTGGACATAGAAAATACATCACAGTTACACAGTAATATACATGCAATCAGACAGTACGTTGTACAGTACTCTAcaactgttttaatataaaacatggcTTCTaagcattaaacaaaatagcaggcacttcacatttatttgccaaataaataaaaccacacccTGCAGAACCACGGTTTTAACAATTCAATGATCACAACTGAccaaggatttttttaaatgcttttcaatTAGGAAAAGATGGgtagtaaaaaaacataaataagagatcctcaaaatgtaaataggattcagcaaataaatacattacacacaaatttgtgtttttatcttatATATCTAGTTATATTTGGAAGTCGttataaacaataaattaagaatGGCATGATATTTACTGAATGCTCATGAAATATAGATAACAGATAGGTACACTGCCAACAAGGGGAAAACAACTACATGTACACAATTGATTTTTTACTGCACTTTAGCAGGTTGGTGGGGGTGAAGTAAAATACTGCACTAGCTTTGAAAATGGCATcaggtgaaattaaaaatgcaatatcaaCCGTCAGTAGACCAGCTGTGGGCCTAACgtaaaaatcatgaaaatatgCTGCCAAGTGGTTTCCAACATGCTTTTCACAagcatctttttctttttctttttgaggcTTTGTCAAAAAGAACTAAACACATCTAAAAACACCCTActcaaaaatgaaagaaagtgCCCCCTACACATAGTTGCAGAAGTTCTCAAACAGTGAAGCCCCATTTCCAGTAACCTGAAACAAATCTGCAGTGCCATTCACTGGCAACTAACAGAAGTAAGAAGTAGACTTAATACTGGGGCATTTATCTAACTAGAGTGCTTAACAATATGGTTTTCCAAGCAGTAAACATTGGCTGCAATTTTGAACTGGCTTGTCAAGACTGTAAGTAACAGCTTCCAGCCAATGGATTATCAATCTGCTTTGGACAAGGCCCAGGTCACAACTAATCTCAACATCGCTGTCGACATCACTGACCCATGTTGGAAcgtagaaaaataaagtaaatacaaattttgtttttattagtttgttttgcttgtttttgttctacTCTAGAGATCCTCTAGAGTAGAACAGAATTGACTGTAATGAAACAGGCCATTAGTATCGTAATCAGATCTGCACGATAAAATgaacaactaaaaacaaatgtatatatcaaaACTTCTCTCTAGTTTGAGATTAAAAATCCATTCAGCACGAAAAAGATCAGCTTCCGAAATTCcccgtttttcttttttgtggtcTACAGCTTTCAAACAAGAAATGGATGGGCATTTTCCTGCCAACATTTGCCAACTTCCTATGTGTACGTGTTTCACATGTGTTTCATGGTATAGCATAtctattaaatgtatgtaatacaaGTTCCCAAGTTGAACTGAAACATAAAGACCCACATCCCACAGAAGACTCTGTGGCTGCTGTCTGTGGTACTGTGCATAATTCATTGCTTCTTTCTCATTAAATCCTAGGAAATGGGAAAGAAGCAATCagagtttaaatgtaaataaaaccacagtatAAAGAAGGCAAACTTCTGTTatagttgtttaaaaatacacagtacaCCAAGGGGCAAATCAGGAGAGccgaagaaaaaacaaatcttatatTTGGTCTGTAACGAAATTTGAATGTGGTAtattacaaatgcatatttgtttCATGATAAGTAACTACtggatacatatatattttcttctttagggaaaaaagtcaaacaattatctaaattatttttgttacatgtgGGATTTGAATTGACTGTATGTAATGAATCAGTTATATTGAgccacaacaaaaaacaaaatcactgaaGCCAAAATGCTTAAACAAGGCTAATGTTTGTTGTGGTTTATAAACagactttcttttctttatatgGACTTACTAATTAGATACAATCAGActcatttctgcatttaaaaggTATGGGCTTCAGACAATGAGAGGTAATCcaaacaattgaaaacatcCATGCCCTTGAAGACACACAGATTTCAAAAATAGAATTTTAGTATTTGCGGTttacagcagtggttttcaaatcggtcctggagtaccccctgccctgctgttttttgttccaactgatgtcttaattgcttaatttaatccttaattgacctaacaatataccattcagttaagtaattaagatctacattggaacaaaaaacagcagggcaggggtactccaggaccggtttgaaaacccctggtttACAGGAATATCAAAGccccatgaaaataaaaaaataaaaaacatcataaaataaaggaattttGAATAACCTGAAGCCTTTTCTCATTCCCTCGAGCCACTTCTACACAAGAAAAGCCCCGAAGAACGTTTTCATTTCAGTAGTGAAGTCAACCAGGCTGATGTTGTTGACTTTCACCTTCAGTTTGTCTTTCTCCTCAAGATAGAATACGGCTCCCGAATACATGCTCTTCATCCACGGCTCCTTTACACATGCGATGCTTTCAGAAGAGGCCATCAATTCCATATCCACTGGATACGCGCCAGAATTCTTAATGACAGTCTGACTTATTCGTCTGTCCTTGCAGGTCATTTCCCCATTCATCCGGAATGTGACTTGCAGATAGACATAATAATGTCCTGCTTTATGGATGACAAGTGCCTTTTCTTCATACGAAAAGCCATTTTTTACAAACGCATTCCCATGCTGACTCTGCCACGGTAGAATGTTTTCATCTTTGGGAAGCTTATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75370 lncRNA downstream 11438 6099445 ~ 6099911 (-) True G60258
TU75364 lncRNA downstream 31478 6079609 ~ 6079871 (-) True G60252
TU75349 lncRNA downstream 55527 6055549 ~ 6055822 (-) True G60237
TU75347 lncRNA downstream 70684 6036565 ~ 6040665 (-) True G60235
TU75343 lncRNA downstream 115661 5995469 ~ 5995688 (-) True G60231
TU75383 lncRNA upstream 40770 6154918 ~ 6155224 (-) True G60271
TU75387 lncRNA upstream 45429 6159577 ~ 6164747 (-) True AMCG00020002
TU75431 lncRNA upstream 160121 6274269 ~ 6276032 (-) True G60311
TU75437 lncRNA upstream 186508 6300656 ~ 6358939 (-) True G60317
TU75473 lncRNA upstream 329127 6443275 ~ 6444733 (-) True G60345
AMCG00019997 mRNA downstream 323893 5769073 ~ 5787456 (-) True AMCG00019997
AMCG00019995 mRNA downstream 401486 5688531 ~ 5709863 (-) True AMCG00019995
AMCG00019996 mRNA downstream 495893 5604443 ~ 5615456 (-) True AMCG00019996
AMCG00019994 mRNA downstream 536663 5568518 ~ 5574686 (-) True AMCG00019994
AMCG00019990 mRNA downstream 730385 5375866 ~ 5380964 (-) True AMCG00019990
AMCG00020002 mRNA upstream 48802 6162950 ~ 6172474 (-) False AMCG00020002
AMCG00020003 mRNA upstream 64108 6178256 ~ 6181661 (-) True AMCG00020003
AMCG00020005 mRNA upstream 72083 6186231 ~ 6200034 (-) True AMCG00020005
AMCG00020012 mRNA upstream 193385 6307533 ~ 6328630 (-) True AMCG00020012
AMCG00020013 mRNA upstream 214860 6329008 ~ 6333367 (-) True AMCG00020013
TU75228 other downstream 818676 5291590 ~ 5292673 (-) False AMCG00019992
TU75221 other downstream 833058 5276662 ~ 5278291 (-) True AMCG00019993
TU75216 other downstream 845424 5263914 ~ 5265925 (-) True G60118
TU75113 other downstream 1050072 5012444 ~ 5061277 (-) True AMCG00019976
TU74813 other downstream 2631240 3479782 ~ 3480109 (-) True G59806
TU75483 other upstream 336474 6450622 ~ 6453598 (-) False AMCG00020017
TU75489 other upstream 349400 6463548 ~ 6466586 (-) False G60348
TU75492 other upstream 349400 6463548 ~ 6466586 (-) False G60348
TU75494 other upstream 354140 6468288 ~ 6471434 (-) True AMCG00020019
TU75693 other upstream 1326655 7440803 ~ 7562592 (-) True G60516

Expression Profile