RNA id: TU75527


Basic Information

Item Value
RNA id TU75527
length 790
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G60377
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6679178 ~ 6695776 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCATGCCATTAATGgtgaacagatttaatttaaagCAAAGCAGGCGGTTTGAACAGGCCGTTAATGCCTGGTCTGGTGTCAGGAACGTTCCTGGTGTGATCACGTGACACGGGAAGCATGTAATGTAACAGTTGTAAAAAGGTTTCAGACAGCTGCGTTTCATTTGAAAAGTGGCTGGATATCTCCAATTAGTCTCAGTTCAGTCCTTACACTGTCAATGCACAGGAAAAGGGGGGGGACAACACCCACATTTCCAGAATTAAATACCCATCGGTACCTCACAATGTTGGCTGCTGCTGTTCAAATCACTTGAAAACGACCATACGATTTGGCTTACCCTTTTAACCCTTATAATTTTCTGTTCAACCTTGTGTATTTGCTTAAACAGAGTCAGGTAAACAGGAAAAGGGAGTTTccattttgaaaactgaattgTGTGTACAATGCGAGAAGGGTTTAGAGGGATAATTTGCCACATAAAAGCTGGGGTTACATTCCTTAGCATTAAGAGTGAGTGAGGCTTGATGCCTTATTAAACATAATTCTGTAAATGttgggataaaaaaaacatttctttatgTGGTCCTTCATGGATTAATCCTGATGCCTTTTACTAACCTACAGCTCTGCAGAGCTTGGTGTCTTTGATTGTATCCGAGCCTTTCTTTCAAACCCAATGAAATACTGCTGCAGTTTTATCAGTGCTTGCTATGGATTTGCTTTGTTCAACCCAATCGCACAAATATGCTGTAATctttttgaatgtattcaaaGAACCAATAAAGGCA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75501 lncRNA downstream 189801 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 212592 6463548 ~ 6466586 (-) False G60348
TU75491 lncRNA downstream 212592 6463548 ~ 6466586 (-) True G60348
TU75473 lncRNA downstream 234445 6443275 ~ 6444733 (-) True G60345
TU75437 lncRNA downstream 320239 6300656 ~ 6358939 (-) True G60317
TU75537 lncRNA upstream 102133 6797909 ~ 6800750 (-) True G60387
TU75725 lncRNA upstream 876821 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 1157225 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 1348833 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 2098192 8793968 ~ 8796315 (-) True G60723
AMCG00020018 mRNA downstream 88075 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020019 mRNA downstream 208712 6467271 ~ 6470466 (-) False AMCG00020019
AMCG00020017 mRNA downstream 217750 6450627 ~ 6461428 (-) True AMCG00020017
AMCG00020011 mRNA downstream 334486 6342787 ~ 6344692 (-) True AMCG00020011
AMCG00020013 mRNA downstream 345811 6329008 ~ 6333367 (-) True AMCG00020013
AMCG00020024 mRNA upstream 173797 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020025 mRNA upstream 203108 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020026 mRNA upstream 290760 6986536 ~ 7008056 (-) True AMCG00020026
AMCG00020027 mRNA upstream 417037 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020035 mRNA upstream 668278 7364054 ~ 7385762 (-) True AMCG00020035
TU75494 other downstream 207744 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 212592 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 212592 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 225580 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 1386505 5291590 ~ 5292673 (-) False AMCG00019992
TU75693 other upstream 745027 7440803 ~ 7562592 (-) True G60516
TU75977 other upstream 2118483 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 2143435 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 4059692 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4999915 11695691 ~ 11701645 (-) True G61269

Expression Profile