RNA id: TU75537


Basic Information

Item Value
RNA id TU75537
length 2842
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G60387
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6797909 ~ 6800750 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAagattcacatttattttgtttttcaagttctAACACATTCTAAACATGCTTTTAAACACATATTGGTCACATTTTTCACAGGTAGTTAAGtaacagagcagagcagacagATATCCACAAAGCCATAATTCTGAAAGAATGTGAGCAGTCTCAATAAAGCAGATTACAAAAACATCAACTATTGGTGATTGTTCACATGGATTGTTGATTTTTCACCAGTGTCACTCCAGTTCTTAACCCATGACACCCACGTTTCTCTGATTTCTTCAAAGGATCATGGGAAAAccaaatttcttttttttttttttgtgctgtttaCTTGACTGAAAAAGCCCAGCCACTCAATTGtgacacattttttaaacaaccaATCAGTGTACCCGTAACAGTTTAGAAAATAATGCTGATTGGATGGAATGTGTCACAGGAATGGGATAGGTACATTTCAGGTTTAAAATgggggaaataaaagaaaaatagttaACCTGCCATGAAATTACATTCTTACAGAAAAGCCTGTATAAGCAGTGGCAAAGCGAAGCAATAAAACAGAGAATCGTcaaattaatacagtatttgGTACTTGTAACAaagattattaatattgtaacttaaaatgtatctaaaaGGTTTCATGTTTCACTCacttgacaaaaacaacaaaaaaaccctACATTAGGTTTCTAAATATTttggaataattaaaaaaaatactgaaatgttaatttgagtaatttgcacaaacaacaaaaatgcataacccccccccaaaaaaaaagcaagcaaaacatcaaaatacatacatttgccCAATCAGAGTGGAATCAGAAATGTAAACCTCCCTCACTCCTGTCTTCGGTAACAATTTAGTCATGACTAACTGTGCatagtaataaaaaacatagGAGTTGCAAAACCATAAAGACAATAACAATTTGCATAAGGAAAACTACACTAGCGTGATGGAACATAGGGTTGTGCACAAAGGATTTGCTTGCCAACAATTGCACTAggcttaaatgcatttaaatggaccacttatttttaatgaacaattCCCCAAAATTAAGACACGTTTTGCATACATACTCTGGATGTAGGCGAAGGGGGATTTTTCTTCATGCAGAATTAGATCTAGAGTTGATATGGTGAACTCTATGCTGAAGACAGCACAGGGGGAAAACGAGGGCAGTGAGACGTGCAGTGCAATAATGGTCATTTGACTACGAGTGGCTTCAGCATGGTTTTGAGGCGTCAGCTGAAGTACTCTCGGAGGAGTCGCTAATATGTTCCCAGAAAGCAGATAAGGTTTAAAGCTGCGGAGTTATTATTCCTGTGCTTTGCTCTATCACTAACACAATTTGAGCAATCTATGCTGACTAGATAAGTCGTGAGATTTATAGATACAGTGTAGTGAAATGGCTGACCTGTGCAACAAATCATCAGATATTGAGCTGAACAGCTTTAGTCTTAACTACATCTCTATTTAATTACACCGCCCTGTGCACTAAACTATCAAAACAGTGTTCACTCTATACAGTAGTGTATTGATTTTGCTCTATAGGCGGTGAAAACAGACATGCGCCATAAATGGTgaagtatacacacacacaaaaaaatcagcATAGGCAGAAACAGCTTTTGCGTATTTGAGGTATCTAAGTATGGTCTGAGGTAAGGTAGCAGTGTGCATGAGGCAGTATTACATAGAAACAACAATTTCCCAGGATGCCTTGCTCCTGGCATAGAATTCACAATCAATGTATTTGGAAAGTATgatacacaaaatgcaaaaggagAATGACTGTTTATGaggcaaatacacacacacacacacacacacactaagcaTTTTCACATACCGTTGTGACCGTAAACAGGATTTCACACGTGAGGTAGCGGTGGTGTTTAAATTGTGATGGATTTATGCAGACTGATGACATTCCATATATGACatgttatgcatttaaaataaaagacatcTGACAGATAATGAGAGACCGATCATCAGTATAGTTTGTTCCATgttcttgtattatttcattagtACTAAATCTGTCAGGTAAGAAATAAAGGGAGGGGGGATTTAACTGAATGCATTGCTTCCTGCAATGTAATCTTCATCAATGTATTGGTTACCAAATTATTTTGTCTCACAGTATTCAGTGATTGTATATTGGAAATGGAGAATGAAATCTGTTATTTGAGGTTTCTTTTATGAACTTCAGATAAGAAATATCACAGTGAGATGCAGCTTCTTATTGTAGCCAGGTGTCTCTAGCAAAATAAGTTGTAAAGGAGAGGATTAGATTAATAATGTTGCAGataacaggaaataaaactgatttgttttaaagtatattaacCTATGAAAATTAGTGGTCATTCTTTATAGAACATCTTAGCCATTCAAAACTACTTAGACAAAGGCACCTCCTACAGTTAACATGAGGTATGTCACTCTAATGCTATGGACTGGTCCAGATTCTGTACTAAAGGCTGAAAGGGACTGCCAACTCTTAATCTTtgcattcaaacattttatatgACTTCAATTGTTTTCAAACCTTATAAGTTTGGCATTGATAAAGAATTTGTAGAAAATCCATCTCTTTGCCACATTAAGTTCCGTGTTCCATGTGTTCCgtcaatataaaaatgaataatcaatacaatacatctttaaaaaataacttataATCGAAGTGTGATACACTAATTCCCTCAATAGCCTCTGCAGATAATTAAAAGGCTGCACTACATGATGTTCTAATCTGTAGTTTgttagtaaaatgtatttcttcatgcTGTTCTGAATTGTAGTCCTTAATGAATTTCA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75527 lncRNA downstream 102133 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 308532 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 331323 6463548 ~ 6466586 (-) False G60348
TU75491 lncRNA downstream 331323 6463548 ~ 6466586 (-) True G60348
TU75473 lncRNA downstream 353176 6443275 ~ 6444733 (-) True G60345
TU75725 lncRNA upstream 771847 7572597 ~ 7572831 (-) True G60540
TU75818 lncRNA upstream 1052251 7853001 ~ 7854373 (-) True G60610
TU75879 lncRNA upstream 1243859 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 1993218 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 1998214 8798964 ~ 8799167 (-) True G60725
AMCG00020018 mRNA downstream 206806 6569055 ~ 6591103 (-) True AMCG00020018
AMCG00020019 mRNA downstream 327443 6467271 ~ 6470466 (-) False AMCG00020019
AMCG00020017 mRNA downstream 336481 6450627 ~ 6461428 (-) True AMCG00020017
AMCG00020011 mRNA downstream 453217 6342787 ~ 6344692 (-) True AMCG00020011
AMCG00020013 mRNA downstream 464542 6329008 ~ 6333367 (-) True AMCG00020013
AMCG00020024 mRNA upstream 68823 6869573 ~ 6896989 (-) True AMCG00020024
AMCG00020025 mRNA upstream 98134 6898884 ~ 6923473 (-) True AMCG00020025
AMCG00020026 mRNA upstream 185786 6986536 ~ 7008056 (-) True AMCG00020026
AMCG00020027 mRNA upstream 312063 7112813 ~ 7126623 (-) True AMCG00020027
AMCG00020035 mRNA upstream 563304 7364054 ~ 7385762 (-) True AMCG00020035
TU75494 other downstream 326475 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 331323 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 331323 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 344311 6450622 ~ 6453598 (-) False AMCG00020017
TU75228 other downstream 1505236 5291590 ~ 5292673 (-) False AMCG00019992
TU75693 other upstream 640053 7440803 ~ 7562592 (-) True G60516
TU75977 other upstream 2013509 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 2038461 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 3954718 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 4894941 11695691 ~ 11701645 (-) True G61269

Expression Profile