RNA id: TU75818


Basic Information

Item Value
RNA id TU75818
length 623
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G60610
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7853001 ~ 7854373 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACagttcaatttttatttttttatgtagaaaCCCTTGAGAACATCACAGCAAATCCTTACTAAAAGCATGTTACATGTCTGAGGTGTGTGTAACATTTCCAGTCTAaaagttgtattgttttgagatttaaaaaattggTTTAGCACCAGAACAACTAATAGTTAAACATGGCTTTCGCCTGGCAGTGTGTGTTGTCGAAGCTTCATGGATTTTGTGGTTCAAGTGTTGTGAATTACTCTGCATCCAACTGCCCCCTTGCATCTGGACAAAGATATTTTCTAACTTAGATCTCTCTGTGCACGGTGCTTCTAATATGTTGACATTTAAGAAGGTCCCAGcacaataattgtattgatccctaaaaatataaatatgttaagttttttctttgcaacttcCAGGGGATGCAGTGTATTTCACAGTGCCTGCCACTGTACTTTATGTTGAGATGACTTCTGTTTTTCCTGATGTCATGTGCCGTCTGTGTCTGTATTGTCACTGCCGGTCGTGTTCTCCAAATCAAGTCCTTGCTGGTCATTTACAAGCTTTGTCCGTAGCGCCCTCTGCCTTTTCAGGTGGTTCCCCATGTGTGGGACTTTTGTCCTGCCAAAGAAAAAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75725 lncRNA downstream 280170 7572597 ~ 7572831 (-) True G60540
TU75537 lncRNA downstream 1052251 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 1157225 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 1363624 6487309 ~ 6489377 (-) True G60356
TU75488 lncRNA downstream 1386415 6463548 ~ 6466586 (-) False G60348
TU75879 lncRNA upstream 190236 8044609 ~ 8047241 (-) True G60656
TU75964 lncRNA upstream 939595 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 944591 8798964 ~ 8799167 (-) True G60725
TU75971 lncRNA upstream 952647 8807020 ~ 8809893 (-) True G60730
TU76021 lncRNA upstream 1125900 8980273 ~ 9017406 (-) True G60774
AMCG00020050 mRNA downstream 42595 7799922 ~ 7810406 (-) True AMCG00020050
AMCG00020051 mRNA downstream 55062 7792298 ~ 7797939 (-) True AMCG00020051
AMCG00020043 mRNA downstream 67009 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020038 mRNA downstream 283396 7537932 ~ 7569605 (-) True AMCG00020038
AMCG00020039 mRNA downstream 337310 7507361 ~ 7515691 (-) True AMCG00020039
AMCG00020054 mRNA upstream 27447 7881820 ~ 7927867 (-) True AMCG00020054
AMCG00020055 mRNA upstream 199446 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020057 mRNA upstream 235932 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020058 mRNA upstream 279808 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020062 mRNA upstream 447890 8302263 ~ 8305952 (-) True AMCG00020062
TU75693 other downstream 290409 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 1381567 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 1386415 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 1386415 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 1399403 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 959886 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 984838 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 2901095 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 3841318 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4629996 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile