RNA id: TU75879


Basic Information

Item Value
RNA id TU75879
length 2633
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G60656
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8044609 ~ 8047241 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cAGGTCGTACCAACAGACGTTGCACAGCACTAAGCCCCCTCTATTCTCTTCTACTTCAGAGTCTTTGAATCGCTGAGGCAGCTCTTTAGTCATGTTTggtgatgtaaaataaattactttcttTCAAAACTGATTGTTAATATAGGAAATTCAGATGTAATGcgccaattattattttttcttggcaaATGCCAGTGATAACTTAGTAGTTAGCAAAGACACTGCAGAAAAGTAGTCACCATAAGGCTCATTATCACATAATTATGATTcagaaaagtataaatattCTGGAGGCAATGCTAATAACGCATGGAACACATGGAATACAATATCTCACTGTACAAACCCTTGGAATGTATACAGAAATGCTTTTAGTGTAAaactcaatttattttgttcacactttttgaatatattgtgTGACTACAACAAGGTTTAACAGCAGCCAACaattcattttgacattttattaaagtagAACTTTGcaatatagtgttaaaatggcttaaacatttgcttttaatacttataaataataaacctgtgtaacaaactacatttacaaaatgtgatttttcaaaAGTTTTTAACATTCAAACCACTACTGTCTTTCAGTCATTCCACCTAGTTTGAAATGCATGTAATACTGTTTCTCTTGGTTAGAGAGAAGGTAGTGAGGTTCTGAAAATTATTTTGTCCACATTCATGAACTGGTAACCTATGGTGTCATAGGGGAGAGAAACGCTACAAGGCTTTTTCAATTTGTCAGTTTTAGATCATCCTTCTGGATTGGGTCATCAGGTACActctcaaaaataaatgactttgtatttttacttcTAACAAAACATTGACTTGCATATTACAATGAATtactatttacttttcattactgcAAATGTACTTGGATGTACTTGCTCTATCAGGATTGCTTGAAGAAACTGGATTACTTGAATTTATCAggtattaaatacaattaattgtgggcattgtttttttaagtaacttcACTTATTAAAccaagtatttgttttgtttactgtacatcaaaatatttacattttacattactagGAATTGCTAGAAAATATTACACTAAGaattatttgtaaaattgaCAAGTTTTTTATACTGGTACAGagtaattttatttatcaatttaataacatttgtttgtttgttttttgtgtagaGTGAAGGGACTATAACAGTATTGGGAGATTAAAAAAGCGAGTCAGACTGACTGCAAGCCCTTCCCTCTGAGAAACGATATTATCTATAGAAACCAAACCCCACTATTTGCTCTTCAACATCAGCACTTGATGTTCTGTTGAAAGATTTTGGAAAAATCTtaatgctgaaataaattatattttctcttgTAAGGAAACTAAAATGCAGTCTATAACtcccatttaattaaatatataacaccaaaacaatccaaaacatctagaatttaaatacaataaacctATGATTCTGTGgtcatatttgtataattaagcttgtgaatgaaatgtttattttcaggcaTGACAACTATCTTTCTTAGCATTTGCATCCTTGAAGCCAGCATTGTGGGATGTGTCCCCATCACATTACTGAGCAGATCCTCGATTGCCCCGTGTCACTGGGGGCATCCAGCTTGGTTTTATCCTTAATCAAGATTGCCTGGTTCCCATACCGAGTATACCAGGTGCTCTGACTTCGGCTGAGATAGGTACTGGGCGGTGCCCGCTCCATttcttgttgctgttgctgccaGATGAGCAGTGAGGTGTCTTGGTACCTCAGTCTTGCATATCCCTCTGAAAGGGCTTTTTCTGCCAATGGCACTCTGCCACTCATGTTACTGCACTTCCATCCTCTCAGTCTCTGTCAATGGTCTTCAGTCATTGAAATGACGCTGGACCCCCAACTCGCTCAGTGTTGGATTTGTCCTCTTGAATGGTTCATAAAAAGGTTAGTCACCTTTCTTGactaatttcctttttcttgtgTGGTGCAAAATCAGTTCAgtgccattttatttctgtatctaTAGCCAAACCCAAATTCATCCTCTGCCCTAAAATAGGATACAATATGCtacctgtttgtttttacataacaAGGATCATCTTCATTTAAAGCCCCAAATCCAAGGAGCTGTATGATATCCAACTGTTTTCTGATGCAGATACCACCTCCAGGTTGATCGCGGGAGCAATATGCATTTCATGCTGTATCTTTGTCAGCAGGAGACTTCAATATGAACAGCACAATTcaattgaagaaaataactatacAGAACCGCCTGGGTCAGGTCCTGCACTGAAACACCCAGCAGGCGTTAACAAAGAGACGATAACTTTccaaatgattattattgttgagaGACATGTCAATAAACATGATCCAAAGTGGTCGCTATCTTCCGTCGTGGCAACGAGTATAATCTTGCGACGATGACAGATCTGATAATCCGATTTGTTTTCATCGTGTCTTTACTGTTCCGAATAAGAGTACGAATTGTTTCCCCCCTGCCGGGTCATATATTTAATCCACACAGAAACTGCACCGCTTTGCTGCGTCCATTGCTGTGTCTCAGCTGTGCTTCGCCCTGGTTTTCGATCATGTCTGTAACAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75818 lncRNA downstream 190236 7853001 ~ 7854373 (-) True G60610
TU75725 lncRNA downstream 471778 7572597 ~ 7572831 (-) True G60540
TU75537 lncRNA downstream 1243859 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 1348833 6679178 ~ 6695776 (-) True G60377
TU75501 lncRNA downstream 1555232 6487309 ~ 6489377 (-) True G60356
TU75964 lncRNA upstream 746727 8793968 ~ 8796315 (-) True G60723
TU75966 lncRNA upstream 751723 8798964 ~ 8799167 (-) True G60725
TU75971 lncRNA upstream 759779 8807020 ~ 8809893 (-) True G60730
TU76021 lncRNA upstream 933032 8980273 ~ 9017406 (-) True G60774
TU76097 lncRNA upstream 1110686 9157927 ~ 9160733 (-) True G60833
AMCG00020054 mRNA downstream 116742 7881820 ~ 7927867 (-) True AMCG00020054
AMCG00020050 mRNA downstream 234203 7799922 ~ 7810406 (-) True AMCG00020050
AMCG00020051 mRNA downstream 246670 7792298 ~ 7797939 (-) True AMCG00020051
AMCG00020043 mRNA downstream 258617 7766925 ~ 7785992 (-) True AMCG00020043
AMCG00020038 mRNA downstream 475004 7537932 ~ 7569605 (-) True AMCG00020038
AMCG00020055 mRNA upstream 6578 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020057 mRNA upstream 43064 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020058 mRNA upstream 86940 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020062 mRNA upstream 255022 8302263 ~ 8305952 (-) True AMCG00020062
AMCG00020061 mRNA upstream 266572 8313813 ~ 8326375 (-) True AMCG00020061
TU75693 other downstream 482017 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 1573175 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 1578023 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 1578023 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 1591011 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 767018 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 791970 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 2708227 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 3648450 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 4437128 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile