RNA id: TU75964


Basic Information

Item Value
RNA id TU75964
length 2348
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G60723
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8793968 ~ 8796315 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAAATTCACTCTTTATTACACAGCTGCACTTTAGATTTACAGTTAAACATTCTCTCCTTCTTATACAGGGAAAAAGGGAGAAGcatcatatttgcaaaatatttatgaaaactgGCGATGCACAGCAAAGTcagtgaagttttttttatatatataaacaaaaataaataacattcttTTCACATTAGAAATTCAAGGGAACTTTGCCAAAGACGAGCCAACGAGAGACAACAAACTTCAACAGGGAGTGCGGGAggtgggtggtggtggtggtggccaGGCCCTCAGCTAACTGTGTACTAATGGAAGTATCATTTCTGGTCACAGGAGCTGTCTGTCTAAAAATGCAGTTCAGTcttaggattgttttttttgttttgttttttacagggCAGGGAAAAGCAAAAAACCTCAAAAACCTCAAAAAGCAATTACGCTTTGTAATGCACCACCACTGCTAAGATCTAcccttcttttcattttagtaagggagaatataaaaacaaatcaacaaaatggtcaaaataaagtataaacCAGCTACAACAAAGGCTACTATATTACCTGTCTGGGCTAGCAGGACAACTTCTGCCAAGGCCCTCCCTGCTCTAAATGGGCAAAGCAAGACATTCAGTATGGCAGAAAATGTACTGGTTGACAACCCTAACACAGtataatgttcatgttttttgttgtgcacattttttttataccatCTGTCTTTGGAAAACTACATACCTGCAACTTGATGAACCCATTGTatctagtgtgtgtgtagatgtatataacatgttttctgcttgaataaagtaaaataacagTGAAAGAAATAAGACTCCAACTGCACAGTGTGACACACTTCAGGATTTACAGGTTGCAAGCTCTTGTACAAAAGGTACTGATGAACAAATGTAATTCTAAGGGTTTCTAATGTCCAGCACCTGatgttaaattatacatattccTGTAGCACACAACACCTGAAATGGATCCAGCAGTTATGCAACAGAAGTTGTATTTACTTCCCTGTGATGTGTATAAACCGGAAGAAAgtgatacatacattttatagtaCTCAAATACCAGCAAACAGATATCACTGACTCATGTCAACCAGAAGGCCACAATGGGAAGACCAGAGCTGGAGAGGCAAGATGAGACACTAAACACGTGGACATTGACAGAAATGGAATGGACAGACACCAACCTAACACTTGTGATCGTACTGTTACAGAATATACAAGAAATGTGCATCTAAAGGGGATTTGTAATAGAGTCATGATAAACATAGTTCAACTGGTAGTTTGGATAGATTAATAAAGCTTCCTttcataatatttaatcatgTGCAAAGAATTTTAAGTAGCAATGACCACACTATTTATAACAACGACATATATATCTGAAAGTGTATCTGAAATCTCGGAGCAACTATAAAAGAAGTACGCCCGCTTTCCTTGCAGCGTTTATCACTAACAGgtatcaaaacaaacaactatatacatttcaaagcgAATACTACTGACAGACTTCGAGAGTAgctgttttccatttaaatcaCTCTAGGATTTCAGTCCCACTTTCTACTGCTCCTATACGGCGAACTTCTATGTATCAAAAACATCCTTCACGAAGCCGGTTTACTGAAGCAGTGTATGACAAGTCAATTTCACAGCAATGGCAGCTTGTTGACCACATGTAAAATAGTGCATGGGTTTACCAATATGAAGAATACTATCCGTAACGTCAACTTGTAAACTTAGCACTGGGTGGAGGCTTCAATATCACAAAGCCAGAAGGTAGTGGACAGTGAATTATAATATCCACAATTGAACTCAAAGATCATGTCATGGAAACGCTGTCTCTCCACCTTCACttgtgcaattaaaattaaCCCTTTCAAAAGTGTTTAATAGACTGTAAATCTGCTTTGAAACATGACCTGTTGTGATTTCACCAGATTTGAACTTTTAGGTCCCTTTATACATCTGTTaagctgtttttaatattcatcaGCTGTTGTGTTTATGTTCAGAATATTTTTAGATTGATGGAAATTTCCATAACTGAAAGCACCATGCTTCTCTGAACAACAGATGTGTTTGTGCTTTCTATTCAAACAAGGGGTCTTAATTAACATCCGGGTGCAATCTTGGTTCTCTGAAGAGAGATTTTCTTAAGCCTGACATTTATAAAAAGCCTGCCATTTGACTTGCTCTTCCAGTGATCACAGTATGCAGTAACTGAAAGACTCTCACTCTTTGCTGGAAGTTGCTCCAGGCAGTGTCTTCTACTAAACTACTTAACAGGGTTGGGGCCAATTCCACTTTTTCGATTCCAATTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75879 lncRNA downstream 746727 8044609 ~ 8047241 (-) True G60656
TU75818 lncRNA downstream 939595 7853001 ~ 7854373 (-) True G60610
TU75725 lncRNA downstream 1221137 7572597 ~ 7572831 (-) True G60540
TU75537 lncRNA downstream 1993218 6797909 ~ 6800750 (-) True G60387
TU75527 lncRNA downstream 2098192 6679178 ~ 6695776 (-) True G60377
TU75966 lncRNA upstream 2649 8798964 ~ 8799167 (-) True G60725
TU75971 lncRNA upstream 10705 8807020 ~ 8809893 (-) True G60730
TU76021 lncRNA upstream 183958 8980273 ~ 9017406 (-) True G60774
TU76097 lncRNA upstream 361612 9157927 ~ 9160733 (-) True G60833
TU76105 lncRNA upstream 473245 9269560 ~ 9303247 (-) True G60839
AMCG00020061 mRNA downstream 467593 8313813 ~ 8326375 (-) True AMCG00020061
AMCG00020062 mRNA downstream 488016 8302263 ~ 8305952 (-) True AMCG00020062
AMCG00020058 mRNA downstream 659017 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020057 mRNA downstream 677932 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020055 mRNA downstream 722038 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020066 mRNA upstream 16470 8812785 ~ 8827610 (-) False AMCG00020066
AMCG00020067 mRNA upstream 58501 8854816 ~ 8876263 (-) True AMCG00020067
AMCG00020081 mRNA upstream 168246 8964561 ~ 8966030 (-) True AMCG00020081
AMCG00020078 mRNA upstream 225508 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020077 mRNA upstream 281425 9077740 ~ 9083125 (-) True AMCG00020077
TU75693 other downstream 1231376 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2322534 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 2327382 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 2327382 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 2340370 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 17944 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 42896 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 1959153 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2899376 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3688054 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile