RNA id: TU75971


Basic Information

Item Value
RNA id TU75971
length 2346
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G60730
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8807020 ~ 8809893 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCACCATGGTGTTCGGACTAGAGCTTTCAttagtttgtaaaataaaaacaaaaggaccaatctttaaaaggttttattaaattgacAAATCCAAAGCCCAACATTTATCAAACTTCTCCTCACAGATCACAAATTGGGGAGTCAGATGACATGTGCATGCTGTCCCAACAGACTGCATTCAAGCTCTCCAGGCGTGATGTTGCTGCGCCTTCACCTGTAATaaagaaaccattaaaaatTGTTTCCCCACAGCCTTCCCCCGAAAGGTTTTCCCATTTTACAGTGGATTCTCAATTCAGTTTAATAGGGACCCAAGAATGAATCCTCGGTTTTGTCCTGCTCCTAAAATCCATGACAAGCACCAACAGATCCAACAAACATGGTTGGGATCTGCCCATCTCAATACAGCTGAACTGAACAGTTACCAGACTATCCAGTTTAGCTGCAGAAGCCTGAACACAGCTTCATTAAAAGGAAGTTGCAGAAATAACACCAGGATGTCCGTGTACAAGACCTCCAAAATCAGCAAGTCCTCCAGCAGCACACTGCTTAGCTAGGCAAAGGGAAGGCTGGCTCTTGCATTAACACTACATTTTGAATTATCACATTGTCGGGCTATTAATCATTCTTGTGCCCACTTTTTCGAGACACTGAATGCAGACTGTGGCCCATTCCTCTGCGCCACCTAATGACACAAACACGACACCTGCAGTCGTGCTGCAACGCCTCTAGGGGCAGGCAAGCAGAGTTATACCAAGTATTACAAATCCAGTGTGGCAGGTTTCCACAGCAAGAAATGCAGCCTACTCACCAATTCCAAACCGAATTCCATTGCATCCTATCCAGTCCTTAGCCACTATCAACTGCTCTGCAATTTTCAAAGAAACAATGTTAATGGCATGAAGGAGAAATGAGGCAATCTATAAAAATTCATAGATATTACTCCATGCATAACCACAGAACTGTTCCAGAAGCCTGCCACAAACTATGCATCTATCTGGCCACGTACCATCCCCAGAGCTCAGTCTAGAGCACTGAGGCAATTGATGGCCAGTTTCTGTTTGCCCTCTTATGGCATAACCACAGTATTCAACCATGATCACATCTCATGGGGCAAGTTTCACTACAGCAGTGATGTAGCAAGTTTAACCCTGGTAGTTTAGCAGTTAAAAAGCCCACATGCACAAACTTACTTCAGGGTTCCCACTCAAGACATGCCATAGCTGCTACACATTCTTCTGAAAGGCTACTCCAAGATTGTAAAAAACCTTCATTCTGGTTAAGTTGATCCCCCTCAGCTTGGTTCCAGTTCTATAAATAGCCATTCAACCTAGAGAGAAAAGTCTACATTTACATCTTGAACTAGATCAGGTTTAAAGAATCCTAACCGTGCAGACACTGCAGGAAAGCTATAAGCCAATTTTAGTCCAACCAACACACGACCACTACAGGCGTTTGGAAGTTTGAAACCCCATACAGGACTTTTACAAGACGCACATTTACAGCGTAACCCTGGCTGTTACAAGTATAATTGTTCTGCAGTTACTAGTTTTATGCACAAACTGAATCAAGTTTACCTGCAAGACCGCACCCCTTAGTCCGGAGAGGATGCACATGGCGTGACGAGGCGCTGAGCTGCAGGAACAAGAGGGAAGATTAGCTCATGCATGAGGCACAGGACCATCTGTCGGGCCAATCATCATCCGCAGCCCCCATTAGTGCGGGGGCCCGATCGCAGACACAGCCCGTCTCTCTCCGCCGCCTAATGACGCATGCGCGGCACAAGCAGCCGCGATGCAACGCCTCTAGGGGCGGAGCTGTCCCTCCCCACGTGGTGAAGGAACACCAAACGCGTTAAATTACCTcaaatttatttcacattatgcAACTAAGGGTCGATATTTTTGTTAGAGACCACAATGCAATTCATTACAAATCTAAATTAATGGATTTGGGGAAACAATGTATACAGTTGGAGGGCTTGTCCAATACTGCCATGCACTACGCATGTACTAACCCATTTAATAGGACAGTGAAAATGCGCACCCTAATGAAAGATTAAATGTCACAGGTAAAAACTGATACATTAAGAAATATGAGTTAGTGCACATCATTGCAAGTAAAATCGAACTATATTATACTTACAGGTCACCTTCAATTAACATATCTGACGTAGACATaggatataaaaatgtattttttatgttgtagCAAAATTACTTATCCAGAAATAAACTAACTTAAAATTACACATCTGATATGAGATTatactatgcatttatttgtacgACAGAATTGCAACGTTAGGCTAGAAAGCACTACCAACCTGCACACGCCTCTCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75966 lncRNA downstream 7853 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 10705 8793968 ~ 8796315 (-) True G60723
TU75879 lncRNA downstream 759779 8044609 ~ 8047241 (-) True G60656
TU75818 lncRNA downstream 952647 7853001 ~ 7854373 (-) True G60610
TU75725 lncRNA downstream 1234189 7572597 ~ 7572831 (-) True G60540
TU76021 lncRNA upstream 170380 8980273 ~ 9017406 (-) True G60774
TU76097 lncRNA upstream 348034 9157927 ~ 9160733 (-) True G60833
TU76105 lncRNA upstream 459667 9269560 ~ 9303247 (-) True G60839
TU76310 lncRNA upstream 1118084 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 1276020 10085913 ~ 10091086 (-) True G61027
AMCG00020061 mRNA downstream 480645 8313813 ~ 8326375 (-) True AMCG00020061
AMCG00020062 mRNA downstream 501068 8302263 ~ 8305952 (-) True AMCG00020062
AMCG00020058 mRNA downstream 672069 8134181 ~ 8134951 (-) True AMCG00020058
AMCG00020057 mRNA downstream 690984 8090305 ~ 8116036 (-) True AMCG00020057
AMCG00020055 mRNA downstream 735090 8053819 ~ 8071930 (-) True AMCG00020055
AMCG00020066 mRNA upstream 2892 8812785 ~ 8827610 (-) False AMCG00020066
AMCG00020067 mRNA upstream 44923 8854816 ~ 8876263 (-) True AMCG00020067
AMCG00020081 mRNA upstream 154668 8964561 ~ 8966030 (-) True AMCG00020081
AMCG00020078 mRNA upstream 211930 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020077 mRNA upstream 267847 9077740 ~ 9083125 (-) True AMCG00020077
TU75693 other downstream 1244428 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2335586 6468288 ~ 6471434 (-) True AMCG00020019
TU75489 other downstream 2340434 6463548 ~ 6466586 (-) False G60348
TU75492 other downstream 2340434 6463548 ~ 6466586 (-) False G60348
TU75483 other downstream 2353422 6450622 ~ 6453598 (-) False AMCG00020017
TU75977 other upstream 4366 8814259 ~ 8828109 (-) True AMCG00020066
TU75987 other upstream 29318 8839211 ~ 8839945 (-) True G60746
TU76536 other upstream 1945575 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2885798 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3674476 12484369 ~ 12486334 (-) False AMCG00020180

Expression Profile