RNA id: TU76097


Basic Information

Item Value
RNA id TU76097
length 2807
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G60833
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9157927 ~ 9160733 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAATGAACTAGCTGTTGAGTTTTATATTGataaatttgttattttgtcagATCTTAGCTTTTTTCTTACAGGTGCAACAgtattatgaatgtatgtacattATTGGCCAAATGAATTTTGTTCATCCAGCTCCTGTTTCATAATGTTTCAGCCAACAGAAGTGCTTGCACAAGGTCAGTGATACTTTTACAATAGTATTCTCCAGAAAGTGGGAAGGGAACGCAAGTACAGtgccttgtaaaagtattcatcccccttggcgtttttcctattttgttgcattacaacccgtgatttaaattgatttttatttggatttaatgtaatggacatacacaaaatagtccaaattggtgaagtgaaatgaaataataactggttttaaaaaaattctaaaaaatgcatatgtattcaccccctttgctatgaagcccctaaataggatctggtgcaaccaattaccttcagaagtcacacaattaattaaataaagtccacctgtgtgcagtgtcacatgatctgtcacatgatctcagtatatctacacctgttctgaaaggccccgagtttgcaacaccactgagcaaggggccccaccaagcaagcggcaccatgaagaccaaggagctctccaaacagttCAAGGGCAAAGTTGTGGaaaagtacagatcagggttgggttataaaaaaatatccgaaactttgaacatcccacagaaCACCATtgaatccattattaaaaaatggaaagactatggcaccacaacaaaccttcCTAGAGAGGGCCCCCACAAAAAGTCATGGACCAGGCAAGGaaggcattaatcagagagtcaacaaagagaccaaagataaccctgaaggagcttgaaagctccacagcggagactggagtatctgtccacattaccactttaagccatacactccacagagctgggctttatggaagagtggacaggaaaaagccattgcttaaagaacaaaaataagcaaatatgtttgcggtttgccaaaaggcatgtgggagactccacAAACATGTGGAAGAAGgaactctggtcagatgagattaaaattgagctttttggccatcaaggaaaacgctatgtctgacgcaaacccaacacctctcaacaccccgagaacaccatccccacagtgaagcatggtggtggcagcatcatgctgtgggggtgtttttcatcggcagggactgggaaacgggtcagaattgaaggaatgatggattgCGCTAAATGCTGGGAAACtcttgaggaaaacctgtttcagtcttccagagatttgagactggaaTGGAGGTTCactttccagcaggacaatgaccctaagcttactgctaaagcaacactcaagtggtttaaggggaaacatttaaatgtcttggaatggcctagtcaaagcccagacctcaatccaattgagtaTCTGTGGTATGACTAAAAGATTGCTGTAtaccagcggaacccatccaacttgaaggagctggatcAGTTTGGATCAGCTggatctgtttttttgtcttatgtcttgtttcacaatacaaaatattttgcatcttcaaagtggtaggcatgttgtgtaaatcaaatgatacaaacccccacaaaatcaattttaagtccaggttgtaaggcaacaaaataggaaaaatgccaagggggtgaatactttcgcaaggtacagtatctgtaatgtattttgacaTGATTTTCCATTATTCAATAGAGGACCAACAGATCTACTGTATAGTGGAGCTTTAAATGTATAGCTAATttatatattctatttatttctgATGTCATTTGGGAATCTTGGGAATTTTTGGGAAGGCAATAGAGGCTGTAGCTCATTCTCATCCTGTTCTAAAACAGAATCATTGGCATACACTTTTCAAAGacaattcaaatacataaataacaaaacaaaatgaaaatactgcATCCTTAGAACTGATCAGATCTGTACTTTGAAGGGATTTTTAAACATCTTTAGACTGTATCACAGAACAGCAGTAAGTTACAAACTGCCTTTAGCTGGAAAGAAATGCACAGCATTGTGAAAGCTTAGGTAAAGGTCCAGCTTAGAGTGCAAGTTCATTTAAATGAGACcccagtatttgttttgttcattatcCTCAGCTTTAACGTTTTACCAGTTTACTTTTTATATGTGATTATCAATGCCATACTTCTGGCACAACTGGGGGGGAGGATAGCCATCAGATGAAAATGGTTTATTGCCTTAAAAAGAGCCTGTATGGTTGACTTGAATCAGTAAATGTGGGTACAGTTGTAGTTAGTATCATTTGAATTAAACCTTTTTCCATGCCTTTGGTGTAATTTGTTAAGAGCAATAAGAGCCAATTAGGACAGACTCAATGTATTTCTTAGTGCATTACTACTCAAAAGTGCACTGTGTATCTGATGAGCACCCTGACAAACACTTCATCTGCATCATGTTCGATAAAAGGGTTTTATGGTTGTGCTCCTCTTCATTTtggtgtctatatatatataatgtgtgtttgtcttcattcttgcatatatacagtatatgattCTCATGCACTAtgtgtgggggaaaaacagtGCAAATGAACATTCATTTCTTATGTATTGCTTTTAGTCTCTGTGTTCTCTGTCTAGCAGTAATGTCAAGTGCCTGTGTACCTTGTACAAAACTGCCTCAGGGtctcttttaaatgtgtattttgttatactttttattttatatttacacattgcTTGTGACTTTGCCAGTTTTGCATTCAACTTTTGTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76021 lncRNA downstream 140521 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 348034 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 358760 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 361612 8793968 ~ 8796315 (-) True G60723
TU75879 lncRNA downstream 1110686 8044609 ~ 8047241 (-) True G60656
TU76105 lncRNA upstream 108827 9269560 ~ 9303247 (-) True G60839
TU76310 lncRNA upstream 767244 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 925180 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 1043106 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 1345675 10506408 ~ 10507637 (-) True G61098
AMCG00020083 mRNA downstream 9616 9145242 ~ 9148311 (-) True AMCG00020083
AMCG00020080 mRNA downstream 12842 9137733 ~ 9145085 (-) True AMCG00020080
AMCG00020082 mRNA downstream 30859 9115473 ~ 9127068 (-) True AMCG00020082
AMCG00020077 mRNA downstream 74802 9077740 ~ 9083125 (-) True AMCG00020077
AMCG00020078 mRNA downstream 108159 9021823 ~ 9049768 (-) True AMCG00020078
AMCG00020079 mRNA upstream 1273 9162006 ~ 9167067 (-) True AMCG00020079
AMCG00020084 mRNA upstream 8819 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020087 mRNA upstream 147176 9307909 ~ 9327357 (-) True AMCG00020087
AMCG00020088 mRNA upstream 239919 9400652 ~ 9444244 (-) True AMCG00020088
AMCG00020093 mRNA upstream 343653 9504386 ~ 9510745 (-) True AMCG00020093
TU75987 other downstream 317982 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 329818 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1595335 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2686493 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 2691341 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1594735 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2534958 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3323636 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3323636 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 3329965 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU319115 True 207 lncRNA 0.47 1 NC_048567.1 60380979 ~ 60381185 (-)
striped catfish (Pangasianodon hypophthalmus) TU319115 True 447 lncRNA 0.43 1 NC_047611.1 14740215 ~ 14740661 (-)
tiger barb (Puntius tetrazona) TU88994 True 1104 lncRNA 0.52 2 NC_056706.1 1264599 ~ 1266232 (-)
mexican tetra (Astyanax mexicanus) TU88994 True 1425 lncRNA 0.43 1 NC_035903.1 21957494 ~ 21958918 (-)