RNA id: TU76105


Basic Information

Item Value
RNA id TU76105
length 1954
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G60839
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9269560 ~ 9303247 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATCTTTTATTGTATCAAGAAACAATTGTTTACAAATcagttaacagaaaatacatttttttttgcaaactaCAACTTTGCAGGTAGGTAACTTTTTATTATgacagacattacatttttttcctttgtaaacTATGGTCTAGTTTATAAAACATGACAGTAAGAACCGACACCAATCCGATGCCCTTTAGAAAGCATTAGAGATGTCACAACACCACACCAGACAGGGACACTACAGAAGTTCTCTCCTCGTTAAAAATGCCGAGTTCATACATCGTACCCTAATCCCGAAGGATACAGAGTGGATTATCTTGTATTACGGCCCaagtcaataaataatgatttataaagcctcaatatttctgttttttgttttcctctgtagGGCCCTCAAGAGGATCccatttatttcatacatatacatttccatatattttttatatttaactctAGCAAACATACATGTCTGTATGATTTTAGAACAAAAATCCCTCCACACATTGTGACATCTCTAAGTGACACGACATGCTTAAGTCGTAagatttctgaaacaaaatccTCCTTACATTAAAGACAAACACcttatttacacatttcaaatatctGCCACAGGCTTATTATTTCGAACACTTTACTACTGTCACTGAAACCTTCTGAAAATTGCATGAAGGAAGAGGAAAGAATAACCCCTCCTTCCTTCCACAACTAAAAGATTCTGGCCACATTACCGTTTCTGAAAGAAACGACATACGGGATTGGATGTAGGGAAACTAAGAACTGTGGAATCTTTGTGTAGATTCTCACAGCAAGTTTAATTAACCccatcttctttctttttcaccaCCCCACATAGACTGACAATTCAGTTCAATCTGGCTGGTAAACCGAGCAACTCGTTGGTGTGCCGTTGCTGTTGGTTCAGACAGAACGTGCTTTTGCTCTCTTACATTTGAGAGAAACCCCTGTAACGTACAATCACAAACGCAAAAGTTTTTCAAACTGCCTTGCACCTTTTTTGggcaaaacaacattttccttTCTCCCCTATGCTCTCAGATTCAACCTGTGGAATTTGGCTTTACTACAGTTTGGACATAAATATAATTCTTCCATAGACTataattccaaaaataaatacgaTAAGTATAATTTTAATTGGAGTTATTTTACGAATTGTAGTGGCAATTACCTGGAGGACAAGGACAGTCTTCCGGGATACAGATATCTTAAGACATATTTGAATTccaattagttttttttggtACATACAACACTGTTAAGCAGCACTGATGTATGCAAAGTTAGCTTATGGATCCTGGTAAGGTAAGAcccttatttaaacaaaaaattgcAATGgtcctgcattaaaaaaattgtgttttcaaagaaaaaaagaaaataaaaaaatctaatttctgtTAAGAGACAAATATACATCTACATAATACTGAAACTTTAAACAAAGATTCAAAAATTTGTTCTATAAAATGgttctaaaagaaaaaacattcataagcactttacagattatacagtagaataataataaaaaaaaactggtgtacattcaaattaataaagtaaCATTAAGACACCAATAAATACCCAGTGTTTACATTAATCACAGCTCTTTACTTATATGGCAGACAAAagcatttacataaaataagccAAGCTAGATTTTCTCTACAAAAGCTACATCCGTTTATTTTCCTCCTAAGATGTAACCGATGGTCTGATTCTTACACCCACAGGAATTTAACAggcaacaataaaaacataaataacaaggCAGTGTTTCTTTGTtccatgtaaaataaacagtacataaataaatacaaaaatgaatagaaCATAATTCTTTCCTCGTTAGTATAAAACCATATAAAAAGGATCCTTcagtcaaaagttttttttttcctaatatttttttttgtttttttttttttttttt

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76097 lncRNA downstream 108827 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 252154 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 459667 8807020 ~ 8809893 (-) True G60730
TU75966 lncRNA downstream 470393 8798964 ~ 8799167 (-) True G60725
TU75964 lncRNA downstream 473245 8793968 ~ 8796315 (-) True G60723
TU76310 lncRNA upstream 624730 9927977 ~ 9928866 (-) True G60993
TU76350 lncRNA upstream 782666 10085913 ~ 10091086 (-) True G61027
TU76378 lncRNA upstream 900592 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 1203161 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 1393371 10696618 ~ 10698099 (-) True G61136
AMCG00020084 mRNA downstream 76100 9169552 ~ 9193460 (-) True AMCG00020084
AMCG00020079 mRNA downstream 102493 9162006 ~ 9167067 (-) True AMCG00020079
AMCG00020083 mRNA downstream 121249 9145242 ~ 9148311 (-) True AMCG00020083
AMCG00020080 mRNA downstream 124475 9137733 ~ 9145085 (-) True AMCG00020080
AMCG00020082 mRNA downstream 142492 9115473 ~ 9127068 (-) True AMCG00020082
AMCG00020087 mRNA upstream 4662 9307909 ~ 9327357 (-) True AMCG00020087
AMCG00020088 mRNA upstream 97405 9400652 ~ 9444244 (-) True AMCG00020088
AMCG00020093 mRNA upstream 201139 9504386 ~ 9510745 (-) True AMCG00020093
AMCG00020094 mRNA upstream 239101 9542348 ~ 9547581 (-) True AMCG00020094
AMCG00020096 mRNA upstream 429736 9732983 ~ 9738219 (-) True AMCG00020096
TU75987 other downstream 429615 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 441451 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 1706968 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 2798126 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 2802974 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 1452221 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 2392444 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 3181122 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 3181122 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 3187451 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile