RNA id: TU76350


Basic Information

Item Value
RNA id TU76350
length 4883
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G61027
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10085913 ~ 10091086 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCACAGTGTGGAGGTGAACTCGTTGTGCTTTGTGGACTATTTTACAAAGGGATCTTCAAAAGCAGAGGTAAACACAAAAACTGAATAGACAAAAGTATCAGTggacaatttttatttgtaagcatgcaaatacatttcaggtACTGCAAACTCCCATCAATCACCTTTCAAATCCTGAAATCCAGGTTGTTCTACAATGGTGAATTGCCCAAAGCTAACAGTTCATTACTTCAGTGCGACAgcaaacatttaacacaaagaATTGATTCTTTGCTATTCCACatctttcaaaacaaaccaatgcaGACTGCACTGCCTCACTTACCAGTCccagaaaacaaaagggaaaccATTACAATTTGGTagtctgaaaataaacaaatggaataGAAATTATTCCCTTAGATATTTTCCCCATTCGTTTAAagatttctgtttcattttaaattatatatctatatatatatatatctatatatttaaatatagctGATTATGTGTCATAAAAATGAGCATTAAATCCATCTTACGATGGTGCCAGCTTTATACATGACGGATGTGTACcatcttttatttcatttacaatTCAATCGAACAATAgatttgcaaagaaaatgtctaaTACAGACGTAAAATATTCACACGTCAGCTCCACAATCGGTTGTACAATTGACAAACAGGCCTCGTCCCCCAAAACCCCGCCCTCCCCGCATTTCTGGCTAAGCaaatttttaaaattcaaaaaatacaaaaagaagaCTCTCTTTTATTTCCAGGGAAAATAATAGGCGATAAAACTGTAGAAATGCAGACAGAAAATGCTGCAAGCTAACCACAATACTTCAGGTGGCTATACAGTGGGCATGTGcagtacaaataaaaagccACGTGTGTTGTATCACAACTACAGTATAATGTACTTGTTTGCCCAGCTAAGGAACTGCATGCATGTCCATGCCTGAGATTAATTGAGGCCTTTTACTGGATGGATTGGTGGGATGTGTGCAATTTGACTTGGAATAAGCAGTACTGCACAGGTCTTTATTATAGAAAGTGGAGACTCCTGTACCTGCCCACCTAATTCTCAGGGGTGATGTTGTCGATTAAGAAACCGCTAACATGATCCTCACTAAGGGCCAGTAACAACCGCAGAAAAAGGTTGACAGGTACAATGGCTGATGCCTATATATGGTCTCCCTTTCAAAAGAATTTGATGTAGAGCAAATTGATCCCAATCCCCCTCCAGAGTAgcacaacaacattaaaaaacagaaacaaaacctaaCATAATAGAGAACCCTCCCTGCACTAattaatacaaagtaaaaaGGTACATACACAAGATTAATTCATGTAATATGCGATCACCCTCAGTAGGTGCTGAAGATGCCATCAGTAGTTTTGCAACACAAGAGGATGGTTCTTCCCTGAGGGCTGTAGACACAGCATTTCTACCCCCCTTCCACCCCCACTTCTGTCATTAAGAAAGCAAACAACAGAACCTACAACTACAGAGCCTGGACACTGTCTTCAACTTGACAAATCTCAAAAGCTTAGGTGACTACGTATAAAACATACCATTCGTTTCTACTGtgggaaaacagaagacacaacCAAATTCATTACATACAAGTTATCTATTTcagtttgataaaaaaaaaatgcacattatgaTGGCACACGCAGACAAACACAAGATCACAATATAAACCTCTGTATAAAAATCTTCCATTCTGCATTTGTGTGTCTCCATACACCTGGTTTGCTCACACTCAAAGACTGGCCAGCACGCGTTACATACAGCATTGCTTCAAATGTTTTATAGCTTCCAGAAAAGAAGTTGATGTTTTAAAGTCTCTAACATATCAACATATGTACAGTAGAACAGCATTACCGTTCGTGTAAAAATGTtattcacattaaaaatgaatgtacatGTAAGGCCAACAACAGTGtcttatcatttttatatttacataatgcTATACAGTAGGAATTTggtaaaaaataacatttacactATGTGGCATCATTCACAAAATACGTCACAAATATACACCCAAGTACACAGATCTGAACACCTGCTTTAAAGCACTGTTGGATGTAGAAGCACAGTAGTAAGAAACAAGGGAACAAGACTTTGTGTTAAGCACGGCCTCTAGACCAATCTTTCAACACAAAATGTAGTTGCTTTAAAACCACTTATTTAATCCAGCTTGTCAGAGATTTATCAAGTTGACGTCCAGACATCAGAGCCAATCCTTTCCTTACAGACCTATAATATAAAATCCTATTATGAATAGGAAAGTTGCCTATTTTACTGCTTAATGCAGCgatgcatttctgtttcttcttcatATCAAGTACAGGTGCCCTCAGGAGAAAATACCTCACAGAAACGTAAGTGCACAAAACCATAATAAAATATCACCACCTCCTTCTGGGGTCTGTGTAGAATTTACCAACTTGGATGAccataaaaattatatattttttaatgtggtcTTTCATTGTTTGTATAACTAGCAGGACAAcccttgcaaaataaaaataaaaatcctggtGACAGATgggtgatgttttaaaataataataaacagtaaacagaaaaaaaaaaagaaaatcccagtacaaaatattataacaaACAACTTCACAGAAGTTATTATAACATGTTTTGAAATCTGTcaaatttgtaaaattaaaagaaattcaAATAGGAAAAGAAAGCCTGAAGGACAATGAGAGTTTCTTCTGAGACTGATTTGTGGTGGTGAAGTCATCCCGAGATAAAATAATGCAGGAAGTCAGTATAACCATGTATGCAATGCCCTTAaagtaactaaataaaataagagtgTTGGTCTTATTGATTTAcaataattagattttttttttttctttgcacaaGGATACAGTCCTGATCTCGATTGGTTTCCTATCAGCTGTCTCCCAgcagtttaaaaacaatgctTCGAACAGAAAGGAATGGAATGTGACACTGTTTTTCCAAACTGTAAATCCCTCTTTGTTTACTGGCAATGAAGAGGGATTAACTGTGCTAGACCttataaactttattatttattattttatttttctaagctTTAACTCTGTGTGTAAAAAAAGAGACATTCCCTTTTGAGTGTGTGAAGTGCAGAATGCATAAGACCAACACATACAAATGTCACTGCATACAAGGTTATATCTGCCAGTGGTGCGGCCTCCGTTTTGAACTTTTTTAACACTGGCATCAGAATGGACACCTAGCAGATTCAATTTTCCTTGCAATAAGTAACCAGTGTGtagaagaaacagcacacaccGATTTTCAAGTTTTAACTCAATATTTTTGCCGTTAGTGGTGTTTCACTGTTTCatgtttcctcttttttttcttccattgatAATCACAAAATTAGGCATGACcaacaatttgaaataaattaaaaggtaCACTATATTGCACTGTTAACGGTGAGCCCTACGGATACAGgctgttatttatattgtctAATCTTTCAAAAAGTGAcgatcatttatatatttttattttgtcatgcaAAATGCATCcctgtaaataatatattaatttactgttgTAAACACAGTAAATATAGTCAAATAGACAATATTCTGCCATTAGCTGCCAGTTTTAAATAACTCTTTAGCTTTACTTTTTACCATATATTTAACACAGAACAAACAAGGTTATAAAAAATTGCACTAGTTAAAATGCACTCGTGCATTTAAAAAACCCCAGAGCACTTCACTGTGACGGCGTCCTGACAAGGGTGTATGTTGAAGTTACCCACAcagctgtaaaacaaattaaaaaaataacaggcaATGTTTTCCTGcaaggaaattattaaataatgtggCAAATGCTTAATGGCAGATGtcctctttttaaatatactttgttAACTTGCTAACTTGTTAATATTCAGAATTTTTGCACTCTGCCTTTTGAAGCAGGTACATGTCAAAGTGCATATCTTTTCATTTGCTCCACTGCTTTGACAACTACAGAACAGTGATAGTTTGGAATCATCAATTACAAGTGAAAGTTTCACCATGTTAGCACTGAGGCAAGGGATCATATGAAATGTGCAACTATGCTAATTAATGACCAGTGATGGTACAGAGAATATTGTCTcactatacaaacaaaacaccagagagagacagaaaataaattgtatttcactaGATGCATCGTGGCAGGGTCCTGCTAGTTTATAATCAAGTTTTCTAGagtggagaaaagaaaatgccattCTGTATTACAAACGGCTTTGCTTTTGCACCCGGCTATTATAATGCTGCTTTTAAGCATCAAGTTATATAATGTCCAAATTCCTATGATGTTGGAAAGTGAACCTACCAAATTCAACAAAGAAAAgttaggaaaaaaaatgcaaatgaaagggCTTCATTCATAGTATCAAAAGGTCCACAGGAATCTTTTTGATGccccataaaaaaaaagaaatctaccTCGAGTATAAAAAGCAGTATTATAAATGCTTGTTTTGAGATATCACAAGCAGGGTTGCTTTTTGTTCCTTCTCAGCTTCCATTGAGTAGCATCTCTCCATTGGCCGTGGTGCCGGCCAGATCCCTCTTCCTGTCCTCTGCAGCATGGAGCGGCCTGGTCTTCAGGACGAGCTTGCTGACACTGAGACCGGCAGAGCCGAGCACCCCTGCTGGGGAGGCAGACTTCCTGAAACACACAGTGATGGGATGAAAtactgattgtttgtttgtttgtgttttactttttggACTGTCTGAAATGCTGCTGTGGAACGGAAGCAATGTCTGTCAATGCCGAAGCACAAGGCTAACCCACGGGGGAGTGTAAAGACATACTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76310 lncRNA downstream 157047 9927977 ~ 9928866 (-) True G60993
TU76105 lncRNA downstream 782666 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 925180 9157927 ~ 9160733 (-) True G60833
TU76021 lncRNA downstream 1068507 8980273 ~ 9017406 (-) True G60774
TU75971 lncRNA downstream 1276020 8807020 ~ 8809893 (-) True G60730
TU76378 lncRNA upstream 112753 10203839 ~ 10205678 (-) True G61052
TU76445 lncRNA upstream 415322 10506408 ~ 10507637 (-) True G61098
TU76499 lncRNA upstream 605532 10696618 ~ 10698099 (-) True G61136
TU76500 lncRNA upstream 607043 10698129 ~ 10700883 (-) True G61137
TU76576 lncRNA upstream 870050 10961136 ~ 10961434 (-) True G61200
AMCG00020112 mRNA downstream 142837 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020107 mRNA downstream 195350 9873449 ~ 9890563 (-) True AMCG00020107
AMCG00020106 mRNA downstream 233367 9826766 ~ 9852546 (-) True AMCG00020106
AMCG00020100 mRNA downstream 286755 9792806 ~ 9799158 (-) True AMCG00020100
AMCG00020098 mRNA downstream 302477 9780815 ~ 9783436 (-) True AMCG00020098
AMCG00020117 mRNA upstream 136408 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020123 mRNA upstream 447196 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020125 mRNA upstream 453699 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020124 mRNA upstream 540206 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020132 mRNA upstream 613889 10704975 ~ 10727531 (-) True AMCG00020132
TU75987 other downstream 1245968 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1257804 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 2523321 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 3614479 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 3619327 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 664382 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 1604605 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 2393283 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 2393283 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 2399612 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile