RNA id: TU76445



Basic Information


Item Value
RNA id TU76445
length 1230
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G61098
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10506408 ~ 10507637 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCTGGAGGTTCACaatcatctttttctttctgcctttttttattttgtattttttatgtatgactgtttttattctgttttgcaGTTGCATGATTTTAGTCATCTTGCAGCACGGGGGAACATataatatgacatttaaaacGTTTTATAAGAAAGTAAGTTGAAgttaatgcaatgtttttacacttggtaaaaaaaaaaaagatcatcACCGATTAGGACATGTTTcgcagatgttttatttattttatttttttaagaagctgCACCAGCTCCAGCATCAATACTTCATGAAGTGTAATTACTGGGCGTTAcgtaatgaaatatttatatagttatacCTTTTTTGCAtcataaactatatatatatatatatatatatatatatatatatatatatatatatatatattctaattgAGCGTTTAATTTCAAGGGTAATTCGTTATTATTGATTGCCACTATTGGTATGCtccacaactttttttttttttagtttttagtttttttgtggtgATAGATTAAAAATCATAGAGAAGAGGGGTGGctgtattcaatattttaactaGTAATCATTATTTTTCGTGTTAAAATCACAGCAGATATTGCAGACTCGAGCAATACTAATTTATTAGGTCACACATCATAATTGATAATAATAGatatatacaaagaaaatacagttaTATTCAAGAGAAAGAgaatcaaaagaaaacatgtgGCACACAAAAAGATAATTCAACAGTGTGTCACtgctggaaataaaatactaaGTTGGGTTTTGCTAATCCTTTTGAAAACAATCAACTCTAGCCTATTGCCTATAATAAAGGACACATCTAAATGGTCGGTCACAGCAGGTGCTTATTGGGGTGGATTTCCTCAGAGGTATTCGCCTGATCATCAATGGGCTAATTATAAACGTTTCTCTTCTGTTAAGATCTACTATATTTGAGTATAGAGTACAGAAGTAACATTTTCAGGACATAATAGTAATATGATTAAGTAGCTCCTgagtttaattgcattttttcagtgttctgtttttttacattttaagggGAAGACATTTCGTGgatgtttaattatgttttgttttaaataacttcCAAAACTTGCACAGTAACTTATTTGAGTAAGTATATAACAATGTTAACtaagtacatttatttgaatatgtattatatatttatagctctatctatctatctatctatctatctatctat

Function


GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU76378 lncRNA downstream 300730 10203839 ~ 10205678 (-) True G61052
TU76350 lncRNA downstream 415322 10085913 ~ 10091086 (-) True G61027
TU76310 lncRNA downstream 577542 9927977 ~ 9928866 (-) True G60993
TU76105 lncRNA downstream 1203161 9269560 ~ 9303247 (-) True G60839
TU76097 lncRNA downstream 1345675 9157927 ~ 9160733 (-) True G60833
TU76499 lncRNA upstream 188981 10696618 ~ 10698099 (-) True G61136
TU76500 lncRNA upstream 190492 10698129 ~ 10700883 (-) True G61137
TU76576 lncRNA upstream 453499 10961136 ~ 10961434 (-) True G61200
TU76577 lncRNA upstream 454674 10962311 ~ 10962510 (-) True G61201
TU76579 lncRNA upstream 459543 10967180 ~ 10969599 (-) True G61203
AMCG00020117 mRNA downstream 244584 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020112 mRNA downstream 563332 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020107 mRNA downstream 615845 9873449 ~ 9890563 (-) True AMCG00020107
AMCG00020106 mRNA downstream 653862 9826766 ~ 9852546 (-) True AMCG00020106
AMCG00020100 mRNA downstream 707250 9792806 ~ 9799158 (-) True AMCG00020100
AMCG00020123 mRNA upstream 30645 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020125 mRNA upstream 37148 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020124 mRNA upstream 123655 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020132 mRNA upstream 197338 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020133 mRNA upstream 266059 10773696 ~ 10779387 (-) True AMCG00020133
TU75987 other downstream 1666463 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1678299 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 2943816 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4034974 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 4039822 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 247831 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 1188054 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1976732 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1976732 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1983061 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile