RNA id: TU76499


Basic Information

Item Value
RNA id TU76499
length 1482
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G61136
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10696618 ~ 10698099 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAACTCATTTTTTCCCCTGGTACTTTAAACCCATGGGATCAATATTACATCTCTTCTCCCCCTAGCATCTTTCATTACTGGAGACCTCCTGTTATAGTgcaaagagagggagggaggtgctCTAAGGAACCCTCACGATGCCCAATTTCCACCAGTCCCGCAGAAAAAAAGGGGTACCAACACTAACAcaatttgcaaaaataaataattaaatctatgGAAAGAAACCAGTGTTAACATTCGATAAGCccttaatttaatacattattttacatactgtataaaGATATATAGAGCGTGCCTCTGAAACAACTGGATTGAATGTGCCTGTTGAAAAGggatgtataaaacaaaaaaggcctGGAACTACACCCACCCAGTTTTCATTCCAGAACCACATGATAAAATGTCCTCAACTGAGACTCCCCTACATCCTTTCAAAAGATTCGAAAATTATGGTTTTCATGATTTGTGAAGCGTTGGGAGTGGATGGCTCTTGATGTtggaggaaggagggaggaagCAACACTAAAGGTGTGGAAAATAACTGTGAGGAAATGAAACAAGGCTTATGCAACCAAAATGCGCCAAGTTTGCATGTTGAACCATGTTGGCGAaccttctctctccccttctatCACCTGAGACTCTTTTAGCAGCGAAGAAGACAATTTCAACAAACCAAACGGATCAATAAATGATTGATTCGGGAAATTTTTAGAATCATtcactttttcttctcttcccccGCTCCTTTGGCGAGGCTCTGACACCATGAGAATTCCTTGTCTTTTGAGATGAAGGAcacgaagaagaagaaagaaaggaagaaagcagGAGGCAGAGGACGAGAAGCCCACAATGCGCTTTGGCGTCTGCAGGTAATTCAGTCGATCGCTGCAGGTGGGAAATCTGGCAGAAAAACGTAACCGTCGTAGAAAAGATTCAAAAAAAGGTGGCTAGGGTGTGAACGTGTTTTCTGTGCGTCCCAAACGTGTGTGTGCACGCGTGTGTTTGTGAGTGGGtgggtgtgggtgggtgggtcaaGTTGTCTCCTAAACCAGAGTCCATGCCCCCCCCCAAAGGACCCTACACATCAGTGCTGATGCTCCTGCTTCGTGTGAAGACCTCTTTCATAGTGACAGAACGTGTGAGGTTGAGCTTGTGGAAGCTGGCCAGGTCCATGGGCAGATCCAAGTCCTCCTGCTGGACAGTCCTGTAGCTGATGCGCTCACCTCCGTTACGAAGCCCCTCTGGGTGCTGCAGGTAGAAGGGCAGCTCGTAGTGCGTGCAGTTGGGGCAGTAAGTTCGGGAGCGGGCGAGCTTTCTCGCCAGGGGAGGGGAATAGATAGCAGGACCGTTGGCGGTGGCTGCTGCCGCCGCGGCCGCTACATTGTGGTTGCAGTGCACAGGCGGGAGATGGGAGTGCATGGCAAAGTCCggctcctcctcatcctcctctgaCTCCTCCTTCTTACAG

Function

GO:

id name namespace
GO:0051963 regulation of synapse assembly biological_process
GO:0051965 positive regulation of synapse assembly biological_process
GO:0007416 synapse assembly biological_process

KEGG:

id description
ko04514 Cell adhesion molecules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76445 lncRNA downstream 188981 10506408 ~ 10507637 (-) True G61098
TU76378 lncRNA downstream 490940 10203839 ~ 10205678 (-) True G61052
TU76350 lncRNA downstream 605532 10085913 ~ 10091086 (-) True G61027
TU76310 lncRNA downstream 767752 9927977 ~ 9928866 (-) True G60993
TU76105 lncRNA downstream 1393371 9269560 ~ 9303247 (-) True G60839
TU76500 lncRNA upstream 30 10698129 ~ 10700883 (-) True G61137
TU76576 lncRNA upstream 263037 10961136 ~ 10961434 (-) True G61200
TU76577 lncRNA upstream 264212 10962311 ~ 10962510 (-) True G61201
TU76579 lncRNA upstream 269081 10967180 ~ 10969599 (-) True G61203
TU76582 lncRNA upstream 294800 10992899 ~ 10993246 (-) True G61206
AMCG00020124 mRNA downstream 48779 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020125 mRNA downstream 145822 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020123 mRNA downstream 156253 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020117 mRNA downstream 434794 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020112 mRNA downstream 753542 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020132 mRNA upstream 6876 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020133 mRNA upstream 75597 10773696 ~ 10779387 (-) True AMCG00020133
AMCG00020136 mRNA upstream 85265 10783364 ~ 10816925 (-) True AMCG00020136
AMCG00020135 mRNA upstream 236676 10934775 ~ 10943764 (-) True AMCG00020135
AMCG00020140 mRNA upstream 400375 11098474 ~ 11109758 (-) True AMCG00020140
TU75987 other downstream 1856673 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1868509 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 3134026 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4225184 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 4230032 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 57369 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 997592 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1786270 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1786270 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1792599 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile