RNA id: TU76500


Basic Information

Item Value
RNA id TU76500
length 2755
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G61137
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10698129 ~ 10700883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctaataatcctttaggtgagtgtatatagtcataaatatacatatgtattgaaaaaaaaaaattaaaaactcttAAAGAAACGGTTTCTGAAAAAGCTTTCTAATGTTGTATGGAACTGAGGTATTCAGTCCCACAAAAAAGACCTCTTAAATGTCCATTGTtgattttcactgcattttattatcaACATTGTGTTAATTAGTCTTAAATTTCCAACCATTTCTGTAACATCTCTGCAATAATTGATAGCATGAAATAGGGAAAAtagaaaaaccaaacaaataaaaattaaaactgcccaagaacacaaaacattgacataaaaaaacatctagcaaaaatgtaataaagaaagCCTAACAATATCATACATTTCCCTACAATTTGTTTCACTTGACATTGAAAGGAACCTGTGTTGATACAGTTACACCATATGGTCTGctaaagcaaatgcaaacaaattaaatagaaagaaaatgcagaaagaatgaaagaaagaaagaaatcagaTAAAATGACTATCAATAAGTCCAACTGCCTGGTGTAGAACCAGAGGGGGATGGGACAAGAGGTGTgaaaggggaggggggaggggctGTACACTGTAACAGCAACACACTGCAAAATATTCCAAATCACTCGCTGGATAACCGTAGAGAGgctaaaaactgaaatacaagtCAGCCGCCCCTTCCCGGAATCCATATAAAACAACGTACAAGTTTACAATCACCCTTTCCCcttggttatatatatatatatatatatatatgtactagtatataatttgctttattcatattgttttttaaaaataagacatgtTTCCCCTATGTCCACTAGCCTTAGGAAGAAAGATAGTAGTGCCCTGCCACCTGTTGCATGTTTCTCTCAGCCACTGATatcaacaaatacattcatgGGCTCCATTCGGGTACCCCATGGGAACACCTGGGATCTTGGGTCTTTTGAGAGACTGATGAATAGGCAAAGAGATCAGAGAAGCACGGGAGATGGGAGAGTGGTTGAACGGAAATGAAACAATGGAGGAAGGGAAAGAGctctaaaataaatgaacagtaatAGAACAGTTATACAGgtcattattcatttataaataagtTCACCTCTACCATTTCTACTCGCACTGATTGGTTTCTTTCCCCCGTTTCTCCAGTTGCACCATATTGTTGTTCTCCAAAAGACAAAAGTGATAacaccaaataaaatattatctgGAGTGATGAAAAAGGTGAGACTGTGGGTTTCGCCAGGCAGTTGCCTGCAGCACAAGGTAAGGAACACAATGGTGATGTCACTGTGGCAGACCAACCTTAATTCAAGACTTGTCACAACCAGAACTGCTTTCTCCTTCTCTAGACTTGCTTGCTTGTAGGTGGTCAAAAAGTGGATTGCAAGTTGAGGCACCAATGTGTTTGGCAGAGACTgtgtgacacacagacacaacacaacCAAAAGATGAAGTAGGTAcacccaaacacacagctggtGTTCACTAAGGACTGCCTTGGTTAGCACAGCCTCCAACCATTGCACATGTTTCTCACTTGATCTGTAAAGCGTACTTTAATTCACAATGCACTTATATCACACACTGCAACTGGATCTGTGTTGTGGTAGTTCTGTAAATCTGTGCCCATCAATTCAGCAGCTCACTGCCTTCTTAAGAAGCAAATATATAATGGGTCCGGTGTTGAATGTGGACatcaatatacatttctttcaaaatgcaGGAATGGTTATATGTGTTGGAAGAACCCCGTTAGACATTTTGTTGAGATATTTTAGTGACTTACTATCATGGGCTGGTAGTCACTTTTACAATACTGATACACAtgtaatgacaataaaaaatacttattttgcaGTGAAGTCAAAAACATGAGGTTAACATTAGAACATTAAGATAGTTCTTCAATAGGCCAAATGGCCTCCTTTCATTTGCAACCTTAAATTCTTATATCCTGACATCGTAGCACAACTTTTTCAAAGCAGGCTCTTCTGCTCTGACCCACACAAGAGAGAATACTTTTACCCAtgatggttttcatttgtttttgcctTTACAACTTTTTCTCTGAGAATAAGAATCTGTTTTTCACTCTACCACTACAAATCAGTccttacagaaaaaataaatgtatcataacCACGTTTTCATCTCACCATGTATCCAATGCAACGGATGGATATGGCTGAGAGGTGGCAGGACCTACATAGCAGGACTGGGTCAAACCAAACcaggtaattaaaaagacaaaagccATCTCTGTAGACAATCTTTAACAACCCAGCGCAATCATCTGAGACTTGCTATTGGTTATTGTAAATGAGCTAAGGTGTTgtgaaatacatacaatttataGGCCATCTGAAATGGATAGACTGATCTTGTAAGATCACATCTCAAAGTATTACTGCTGCAGTTGACAAATCTGCTTAGAGTTGATCGCACTGGGAGGCATGTATCAGGCATAACCAGTTAGAACGTTTAGTAATCCTGCAAGGTCAGAAGAACACAAGTTGCAAGACTATGGGAGTACTGaggctttcattttcatcaaaaGCTGTGTTCAACTATGGAGCCCCTTCCAATCTCGCAGTCTTTCTGAGATGTTAAGCCACTTGATACCCAGAATCCTGACTTGCCTGTTTAATTTGTGACATTTATGGATGACTTTCAATACAAATTAGTGCCTActtatcaaaataatatatatatatatatatata

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76499 lncRNA downstream 30 10696618 ~ 10698099 (-) True G61136
TU76445 lncRNA downstream 190492 10506408 ~ 10507637 (-) True G61098
TU76378 lncRNA downstream 492451 10203839 ~ 10205678 (-) True G61052
TU76350 lncRNA downstream 607043 10085913 ~ 10091086 (-) True G61027
TU76310 lncRNA downstream 769263 9927977 ~ 9928866 (-) True G60993
TU76576 lncRNA upstream 260253 10961136 ~ 10961434 (-) True G61200
TU76577 lncRNA upstream 261428 10962311 ~ 10962510 (-) True G61201
TU76579 lncRNA upstream 266297 10967180 ~ 10969599 (-) True G61203
TU76582 lncRNA upstream 292016 10992899 ~ 10993246 (-) True G61206
TU76670 lncRNA upstream 1012618 11713501 ~ 11723414 (-) True G61273
AMCG00020124 mRNA downstream 50290 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020125 mRNA downstream 147333 10544785 ~ 10550796 (-) True AMCG00020125
AMCG00020123 mRNA downstream 157764 10538282 ~ 10540365 (-) True AMCG00020123
AMCG00020117 mRNA downstream 436305 10227494 ~ 10261824 (-) True AMCG00020117
AMCG00020112 mRNA downstream 755053 9931750 ~ 9943076 (-) True AMCG00020112
AMCG00020132 mRNA upstream 4092 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020133 mRNA upstream 72813 10773696 ~ 10779387 (-) True AMCG00020133
AMCG00020136 mRNA upstream 82481 10783364 ~ 10816925 (-) True AMCG00020136
AMCG00020135 mRNA upstream 233892 10934775 ~ 10943764 (-) True AMCG00020135
AMCG00020140 mRNA upstream 397591 11098474 ~ 11109758 (-) True AMCG00020140
TU75987 other downstream 1858184 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 1870020 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 3135537 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4226695 6468288 ~ 6471434 (-) True AMCG00020019
TU75492 other downstream 4231543 6463548 ~ 6466586 (-) False G60348
TU76536 other upstream 54585 10755468 ~ 10756419 (-) True G61170
TU76663 other upstream 994808 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1783486 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1783486 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1789815 12490698 ~ 12504677 (-) False AMCG00020180

Expression Profile