RNA id: TU76579


Basic Information

Item Value
RNA id TU76579
length 2420
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G61203
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10967180 ~ 10969599 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taagaagaaaatatttttgcatttattagaCAATTTGAACACAAGTTCACATACAGTGTGCAGATGGAAGCATTtcatgagaaaacaaaagtaacagTTCAATACCTTTTCCTCTTTCCTAACCTCATTCTGTACAAAGATTCTGCTTGCATCATTTTTTAAAGGAGTTACATGAAATTGATTATTATCCCATAATTATTCAGTCAATACAAGTGTATAAAGTAGCACATATGAATGCATAGCCCAAGAGTGCTGGGAAAAATGTGATGGttttcaaaaaaggaaatgaatggTGTACATGGAATACCTACGGATCTTCAACACAGTGCAAAATTGCATCGACTGCATCactaaaaatctaatttaaaatatcaatatgaaattgatcaaatcaaaaacaaaacaaaaaaacatgaaaatcaaaGTTTAGCACAGGGGAGTAAGATGATCATTACATATGATATTAGACACGGCATACTACGAATCCTGAGCCGCAGCACCAGGTAGTGGCTGCAACACTTCCTGAAGGCCATGCACATTGGTCTTATGGCTAGTTTAAATATATGCTGCTCCTAACCAGAGTTCACATAGTCCACAGTCATCCCCTAACGTGCATCAGTATACATTTTCATCTTTCAATCTGCTAAAGATTTGTCAAGAAGCACACTCGATCACTGAAGATTAAACCAACACATGATCCACAATAGAGCCGGATATTAGTCACGGCCCTCCCACCGCTCCCTCTCTATTCACTTCATGCTTcgcttctctctctgctgctggtGCGAAGAGCAGAGCTGAAAACTGGGGGATTCCAAAATTAAAACCaccaaagaaaccaaaaacaatggAATTGCCCTAGGCTTCTGCACCTCGGACAAAAAAGGGATACCAGGGCTATTGAGTTCccattgtacttttttttttttacggtgTCTAGAAACATTTGGCTTGAAGCAGGTGACAGCAATCAAACGGCACTGGACCAACTGCCATTACCATTACAGACTGACAGGACAGATTTCCTTCTATGCGTCTCCAGTGCAACGAAGCAAACAGCCCGTTAGGATACGGAGAACATTGCAGCATCACAGGTGCACGCTGGGAAATTCCTCAGCAGTTATGGGCACTGTGGCTCAGCACTCAGGCACTGGAGAGAAATGCTTTTGGTCTCCTTTGCCTTAACGCAGATGTGCACTACTCTTGACCTGGAGAGCAGAAGCCCATCAGGttttatggtttaaaatgattacaatCAACTGCTTGAGTTAGGTAGTGACGATCTCTTGTGGACTGAAAATCTGACGAAGCTGGTCTCCACGATCCAGCTTTCCTTCAGAGCAGGCAGCCAAACTGCTCATTGAGTACTAATAAATGCAGATTTTTCAGCAAATCCTCATTTTGTTCAGTGAATGCCAATAGCCTTAGAGGTAAGCAGTAATTTAGGCATGgcaaataaaggaaaacagttTGATTTCAATGTAAACAAGCCCTGAATCCCTAACTTGCTGGCAAGACCACGAGGAGAGCAAATACAGGAATCTGTCAGCCCTTGCGTTTGACCCAAAATACTCAATCTACATTTTCAAAGTGAAATAGCATGAAAACTCCACAAgagaaaccaaaaaatacaaacacattcatgtagaaaaaatgattaaaaaagacGAAAGGAAAAAACAGTCACAATGCAAGGAAAAGTACATAATAATGAGGTACCTATTGTTTCAGGAGTGCCTTTAGATAAACAATCCAACATGTCTTGGTCTCTGGAATAAATgggtgaatacatttttaagcaaatgcatttcatgGGAAGGTTCTGTAGATTAGGTATACTccataacattaaataaaagtgcTTGACATTTCAGCAGCTCTGAACAAGATGTATACCTTAAAGGAAAAGCATGCCTTGCAAGTATTTTATAATTaggtcataaaaaaaaaaagtcccattCAATAAacccatttaattaaaattaaagaaaaaagaaaaaatgctgcCCCCCACTGGAAGTCATACTGATAATTTAATCCTGTAGTTTGACTGTAGATGTGAAGACTATCATTCTGGATTATTTGTGATAGGAGCCAAATCAAGGCTGGTGTTTCTCTTTAAAAGTCTAACACAAGACATTGTCCCACCCTGCCAGTACAATGATCCCATGAGTCTGAACATCAGCTCGTTGAAGTTGGACAGAAGGCACAATTACCAGCAAATATCTTACTCGTAATTCAGCCCCCTATGCTTCTTAATTAGTGTTAATTACACATAGAGTCTAGACTAATGCTCAGTTTCTACTGCTTTACAGTAAGAACACTTGAAATGCAATGGGAGAGGTTGGTCTGCAGTGGTATTTCCTCACCAGTTTTGAGTAGCAGTTGTGGAACATTTTAGCATCAGACTTCCCTTAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76577 lncRNA downstream 4670 10962311 ~ 10962510 (-) True G61201
TU76576 lncRNA downstream 5746 10961136 ~ 10961434 (-) True G61200
TU76500 lncRNA downstream 266297 10698129 ~ 10700883 (-) True G61137
TU76499 lncRNA downstream 269081 10696618 ~ 10698099 (-) True G61136
TU76445 lncRNA downstream 459543 10506408 ~ 10507637 (-) True G61098
TU76582 lncRNA upstream 23300 10992899 ~ 10993246 (-) True G61206
TU76670 lncRNA upstream 743902 11713501 ~ 11723414 (-) True G61273
TU76703 lncRNA upstream 955965 11925564 ~ 11927864 (-) True G61302
TU76759 lncRNA upstream 1032101 12001700 ~ 12002091 (-) False AMCG00020159
TU76846 lncRNA upstream 1424686 12394285 ~ 12395028 (-) True G61424
AMCG00020135 mRNA downstream 23416 10934775 ~ 10943764 (-) True AMCG00020135
AMCG00020136 mRNA downstream 150255 10783364 ~ 10816925 (-) True AMCG00020136
AMCG00020133 mRNA downstream 187793 10773696 ~ 10779387 (-) True AMCG00020133
AMCG00020132 mRNA downstream 239649 10704975 ~ 10727531 (-) True AMCG00020132
AMCG00020124 mRNA downstream 319341 10631292 ~ 10647839 (-) True AMCG00020124
AMCG00020140 mRNA upstream 128875 11098474 ~ 11109758 (-) True AMCG00020140
AMCG00020141 mRNA upstream 175096 11144695 ~ 11162222 (-) True AMCG00020141
AMCG00020139 mRNA upstream 211787 11181386 ~ 11187648 (-) True AMCG00020139
AMCG00020151 mRNA upstream 849126 11818725 ~ 11843715 (-) True AMCG00020151
AMCG00020155 mRNA upstream 990018 11959617 ~ 11960888 (-) True AMCG00020155
TU76536 other downstream 210761 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 2127235 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 2139071 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 3404588 7440803 ~ 7562592 (-) True G60516
TU75494 other downstream 4495746 6468288 ~ 6471434 (-) True AMCG00020019
TU76663 other upstream 726092 11695691 ~ 11701645 (-) True G61269
TU76919 other upstream 1514770 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 1514770 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 1521099 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 1521099 12490698 ~ 12496740 (-) False AMCG00020180

Expression Profile