RNA id: TU76910


Basic Information

Item Value
RNA id TU76910
length 724
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G61470
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12430802 ~ 12451793 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCATTTCAATTTGACATCCACTCTGAAACTGGATGCTACACCAAGACAATAAAATTTAACCATAGAATGCACAATAactttatgaaaaatatttacacattcccccccttccccttaACTGTCCCCTCACCTACCCCATCCCACCCCAacccccactcccactcccaccaGAGAACTCCAAAAAAGCATTACACAGTCAGAGGAtcacagagaggaaaacagCGCCGCCGTAGAGGAGGAGAGATTCCCGCTGCACTTTGCCTGTGCTCCGTTACAACACTCATCAGTACCCAGAGTTCCCATCTGGCTTCTGGGATTCTCCTCCGTGTTCTCGCCGCGCTCCCAGTTACATGACTAGGCGCACACAAGAAAAAGGGTTGAAAACTTTGAAAGGTCGAACGTTCCAGAACCCAAAATGGTCAGGGTAACTTGCTGCTTAAAATCCAAAGGGGGGagaaataagaataaaacaaattatgaagCTTATCTGGGAGAATGTTCAGGGTTGGTTGCAGTTTGACCACTTTTCATTCCAACTGCTGCACTCATCTACTCTATTAACCAGGTTATGTTGACGTCTATAACACAGCCGGTTCCTCGTCTGAAAGCATGCGTGACGTGGGAGAGCAGGGGAGGTGGGGCGGACCATCTTGGACCCCcaaagatgtgttttttcttgggCACTTGTGTTTCTCTCAGATATTGAGGGAGAgaaggggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76846 lncRNA downstream 35774 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 428711 12001700 ~ 12002091 (-) False AMCG00020159
TU76703 lncRNA downstream 502938 11925564 ~ 11927864 (-) True G61302
TU76670 lncRNA downstream 707388 11713501 ~ 11723414 (-) True G61273
TU76582 lncRNA downstream 1437556 10992899 ~ 10993246 (-) True G61206
TU76926 lncRNA upstream 42008 12493801 ~ 12499426 (-) True G61477
TU76944 lncRNA upstream 126878 12578671 ~ 12583748 (-) True G61488
TU77020 lncRNA upstream 267574 12719367 ~ 12743437 (-) True G61550
TU77034 lncRNA upstream 352877 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 555629 13007422 ~ 13007666 (-) True G61593
AMCG00020175 mRNA downstream 12574 12414984 ~ 12418228 (-) True AMCG00020175
AMCG00020174 mRNA downstream 21850 12395555 ~ 12408952 (-) True AMCG00020174
AMCG00020168 mRNA downstream 49053 12376133 ~ 12381749 (-) True AMCG00020168
AMCG00020167 mRNA downstream 55654 12371831 ~ 12375148 (-) True AMCG00020167
AMCG00020164 mRNA downstream 223250 12206692 ~ 12207552 (-) True AMCG00020164
AMCG00020180 mRNA upstream 32578 12484371 ~ 12509923 (-) True AMCG00020180
AMCG00020179 mRNA upstream 65013 12516806 ~ 12529593 (-) True AMCG00020179
AMCG00020178 mRNA upstream 98777 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020185 mRNA upstream 145866 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020184 mRNA upstream 166807 12618600 ~ 12619814 (-) True AMCG00020184
TU76663 other downstream 729157 11695691 ~ 11701645 (-) True G61269
TU76536 other downstream 1674383 10755468 ~ 10756419 (-) True G61170
TU75987 other downstream 3590857 8839211 ~ 8839945 (-) True G60746
TU75977 other downstream 3602693 8814259 ~ 8828109 (-) True AMCG00020066
TU75693 other downstream 4868210 7440803 ~ 7562592 (-) True G60516
TU76919 other upstream 32576 12484369 ~ 12486334 (-) False AMCG00020180
TU76921 other upstream 32576 12484369 ~ 12496740 (-) False AMCG00020180
TU76915 other upstream 38905 12490698 ~ 12504677 (-) False AMCG00020180
TU76916 other upstream 38905 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other upstream 38905 12490698 ~ 12492565 (-) False AMCG00020180

Expression Profile