RNA id: TU77020


Basic Information

Item Value
RNA id TU77020
length 1185
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G61550
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12719367 ~ 12743437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aataaaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgtcgaCAGAACTTGGTCCAAAACACCAACTCGGCACTTTTTActcatttaaaactatttattattttacttttatgtcATAAATGTTATGACATTGTCAAGTAAAACTCCAAACAACCACGCATCGTGCAACATTTCGTTACAATGATTTTACCATCACATGTATTGTTCCCCTTTCAAAACAACAGGAGGACAGCACTTCAGAAAAAAGTGCTGCAAACTTTTCCCCCCCGAATTTCTCTCTTTCATATATACACCCGATCACAGAAATACAACAGTCTTTGCAAACATTACGTTTCACAAAGCAACACGCTAATACAAAAGAATATAACCTGGAGCTTTTTTATACAATagtattttgctgttttttctttttttttctatttagaaaaaattaaaagttggtataaaaccaacaataaaaaaacgaaGTCATCAGtgcaatgttaaaaatatatataaagaaaaaaaaaatctcaagtttaaaacaagcgatgcatatatataatttgtttttagccAAACCCAATCCAATCCTTATTGTTACTGTATCGCTTTCCATTCATACAAGGCGCAAGAAGCATCCAACGACACAGGGGGGGCGCAGAGACACTCAGTGGGGATAAATCCAAAATTTGACCAACCCTAATGGCAAATTACTAACCCATACTCGGTGACAATGTTTGTCAGAGCCTCTATTCTTCTCTTACGCATAAAAAAGTGCCAcaaagtaatgagttataatgtagaATTGCGGGCtggttcaaagttttgatttaactCCATCAGCACAAAATAGACTGGGGTATACAATGCAGATACGGGGAAGGGGGGTATAAAAcgtatgacatttaaaaaaaagcacacagagGGATCATACAGACACAATGTATGAAAACACAATGTACACAAACAGGCGCACTGAGTGAACCGGGGAAACCTAATAACGCTCCCCACACGTGAAAGAGTAGCGTACTAAAGGTATACAGGgtcaaaacagtatttttctatatatGCTTTAGGATACTATTTTGATCAAAGTATACATTTGGTATTACTACTCTTTAACAAAGGTAGAAACAGATTATCATGTTTCTTCCGCTGGcctttaattgtatgcagacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU76944 lncRNA downstream 135619 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 219941 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 267574 12430802 ~ 12451793 (-) True G61470
TU76846 lncRNA downstream 324339 12394285 ~ 12395028 (-) True G61424
TU76759 lncRNA downstream 717276 12001700 ~ 12002091 (-) False AMCG00020159
TU77034 lncRNA upstream 61233 12804670 ~ 12805433 (-) True G61558
TU77095 lncRNA upstream 263985 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 593579 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 703565 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 834972 13578409 ~ 13653379 (-) True G61803
AMCG00020183 mRNA downstream 54855 12658313 ~ 12664512 (-) True AMCG00020183
AMCG00020186 mRNA downstream 72720 12641707 ~ 12646647 (-) True AMCG00020186
AMCG00020184 mRNA downstream 99553 12618600 ~ 12619814 (-) True AMCG00020184
AMCG00020185 mRNA downstream 121133 12597659 ~ 12598234 (-) True AMCG00020185
AMCG00020178 mRNA downstream 156383 12550570 ~ 12562984 (-) True AMCG00020178
AMCG00020188 mRNA upstream 10420 12753857 ~ 12759226 (-) True AMCG00020188
AMCG00020190 mRNA upstream 18972 12762409 ~ 12766384 (-) True AMCG00020190
AMCG00020189 mRNA upstream 23228 12766665 ~ 12776416 (-) True AMCG00020189
AMCG00020193 mRNA upstream 38886 12782323 ~ 12790560 (-) True AMCG00020193
AMCG00020196 mRNA upstream 66037 12809474 ~ 12810528 (-) True AMCG00020196
TU76920 other downstream 209430 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 214690 12490698 ~ 12504677 (-) False AMCG00020180
TU77089 other upstream 254401 12997838 ~ 12998223 (-) True G61589
TU77151 other upstream 478163 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 852081 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 920650 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 1061583 13805020 ~ 13808333 (-) True AMCG00020252

Expression Profile