RNA id: TU77089


Basic Information

Item Value
RNA id TU77089
length 386
RNA type TUCP
GC content 0.52
exon number 1
gene id G61589
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12997838 ~ 12998223 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaattgctgaaaaagttaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgccgaaagtgcctacaatgggcacgtgagcatcagaactggaccacggagcaatggaagaaggtggcctggtctgatgaatcacgagttcaaggtgttgacttggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacctcgcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77034 lncRNA downstream 192405 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 254401 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 414090 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 498412 12493801 ~ 12499426 (-) True G61477
TU76910 lncRNA downstream 546045 12430802 ~ 12451793 (-) True G61470
TU77095 lncRNA upstream 9199 13007422 ~ 13007666 (-) True G61593
TU77227 lncRNA upstream 338793 13337016 ~ 13338101 (-) True G61696
TU77271 lncRNA upstream 448779 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 580186 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 752861 13751084 ~ 13751298 (-) True G61872
AMCG00020197 mRNA downstream 99581 12889641 ~ 12898257 (-) True AMCG00020197
AMCG00020198 mRNA downstream 109977 12880664 ~ 12887861 (-) True AMCG00020198
AMCG00020194 mRNA downstream 170816 12818930 ~ 12827022 (-) True AMCG00020194
AMCG00020195 mRNA downstream 184628 12810663 ~ 12813210 (-) True AMCG00020195
AMCG00020196 mRNA downstream 187310 12809474 ~ 12810528 (-) True AMCG00020196
AMCG00020201 mRNA upstream 31446 13029669 ~ 13033709 (-) True AMCG00020201
AMCG00020202 mRNA upstream 35866 13034089 ~ 13038065 (-) True AMCG00020202
AMCG00020199 mRNA upstream 77495 13075718 ~ 13079535 (-) True AMCG00020199
AMCG00020203 mRNA upstream 85406 13083629 ~ 13083952 (-) True AMCG00020203
AMCG00020204 mRNA upstream 94340 13092563 ~ 13110839 (-) True AMCG00020204
TU76920 other downstream 487901 12500424 ~ 12509937 (-) False AMCG00020180
TU76915 other downstream 493161 12490698 ~ 12504677 (-) False AMCG00020180
TU76921 other downstream 501098 12484369 ~ 12496740 (-) False AMCG00020180
TU76916 other downstream 501098 12490698 ~ 12496740 (-) False AMCG00020180
TU76923 other downstream 501098 12490698 ~ 12496740 (-) False AMCG00020180
TU77151 other upstream 223377 13221600 ~ 13224510 (-) True AMCG00020212
TU77373 other upstream 597295 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 665864 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 806797 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 806797 13805020 ~ 13808333 (-) False AMCG00020252

Expression Profile