RNA id: TU77195


Basic Information

Item Value
RNA id TU77195
length 334
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G61670
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13342680 ~ 13343013 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagagcaacacaatTCACCTCAAACAGTGCACAACCAAACACCCCCAAAGCGGATGGCTTCATAGGCCCTCAGAGACACTCACTGTCTATTGGGCAGCAGCAATCCAGAACTCTGAGCTCTCCGCAAGTTGCCATTAGGATGTGCTGCTGAGGGGGACGGGCTGTGCTGCTGATAATGTTGCTTATTGGCTGGCCTGGCGAAGGCGCTCAGGACACTGTGACCCTCCCCTTCCGACTCACTGTGGGCTGCGGAGACATAGGGAGacgggaagagagagagtgtgagtgagagagagcaagggaaAGAGGtagagtgaaaaaaaaaggaagaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77194 lncRNA upstream 981 13341479 ~ 13341699 (+) True G61669
TU77193 lncRNA upstream 1365 13340953 ~ 13341315 (+) True G61668
TU77173 lncRNA upstream 4592 13336996 ~ 13338088 (+) True G61650
TU77088 lncRNA upstream 344453 12997850 ~ 12998227 (+) True G61588
TU77051 lncRNA upstream 490616 12829972 ~ 12852064 (+) True G61568
TU77196 lncRNA downstream 130 13343143 ~ 13343381 (+) True G61671
TU77197 lncRNA downstream 744 13343757 ~ 13344039 (+) True G61672
TU77199 lncRNA downstream 5842 13348855 ~ 13349146 (+) True G61674
TU77201 lncRNA downstream 8235 13351248 ~ 13351534 (+) True G61676
TU77328 lncRNA downstream 252501 13595514 ~ 13596726 (+) True G61774
AMCG00020213 mRNA upstream 12503 13303410 ~ 13330177 (+) True AMCG00020213
AMCG00020206 mRNA upstream 87389 13248757 ~ 13255291 (+) True AMCG00020206
AMCG00020192 mRNA upstream 527348 12802058 ~ 12815332 (+) True AMCG00020192
AMCG00020191 mRNA upstream 607467 12734875 ~ 12735213 (+) True AMCG00020191
AMCG00020187 mRNA upstream 652335 12664908 ~ 12690345 (+) True AMCG00020187
AMCG00020218 mRNA downstream 93729 13436742 ~ 13451791 (+) True AMCG00020218
AMCG00020217 mRNA downstream 113666 13456679 ~ 13461481 (+) True AMCG00020217
AMCG00020225 mRNA downstream 170541 13513554 ~ 13516767 (+) True AMCG00020225
AMCG00020223 mRNA downstream 202398 13545411 ~ 13579175 (+) True AMCG00020223
AMCG00020222 mRNA downstream 240268 13583281 ~ 13585950 (+) True AMCG00020222
TU76948 other upstream 722863 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 804928 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 804928 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 3554628 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 7156596 6182712 ~ 6186084 (+) False AMCG00020000
TU77200 other downstream 6664 13349677 ~ 13350712 (+) True G61675
TU77491 other downstream 490157 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 520464 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 605413 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 1124787 14467800 ~ 14469300 (+) True AMCG00020281

Expression Profile