RNA id: TU77200



Basic Information


Item Value
RNA id TU77200
length 1036
RNA type TUCP
GC content 0.62
exon number 1
gene id G61675
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13349677 ~ 13350712 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TACCTGGGGGTGTCAGTGACAGGGGTGCTGGAGCCTCCTGGGGTTACTTTCGGGGAGACCCCCCTCGGAATCCTGCGTCCTCTGGTGTCTCCTGTCTGTGTGGCTCTGAGGGGCGACCCTGAAATCCTCGTCTTGGACTGGGAGGCAGAGGGGGATGGAGGCAGAGGATGGCGTTTGGGGGGTCCATGCTTTGGGGGACTggccgagggggaggggggctgtcTTGGCGCGGAGGGTGGGGGCACAGACATTGTCCAAGCGGTCCTGAAAGGGGCTTCATCTCCAACTTCATCTTCGAGCTCCCCCTGCCAGTCTTCACCTgcttcctcttctccctccctcgcCTGGCGCCCGCTGTCCCAGGAGAGGCGGtggtggaggagagaggggcTGCTATTCCCTCCGAACTCATCGGCGCTGCTGCTCTCAGAGGAAGGAGAATCGGGGAAGGGCTCGGCCTGGAGGTCGGGTCCCGGGGCATCCAGGTCCTCTCTGGAAAGCCGGCACAGGAAGCTCCGGTCAAGGTGGGTTGTGGAAGGTCCGATTTGGCGGTTCTGCTGGTGCAGGGTTCTTGGCGCTGGGAGCAGCAGGGGCTGAGCCCGAGAGAGGAGGGTTCCGCTGAACGGTGTCTGCCCCTCTTCATCCTGCTCAGGCCCTGTTTCACTGTCCCCCGAGACACCaacactgttgtgttttgtgactCTGTATGCTGTCGCTGGCTCTCCCTCTTCATCTTTCTCTCCAAAACCAGTCAGAAACCTGGCCATTGGAATGTCAGATATGTCCCCGAAGTCTTCTGGACCCCTCGTCACAGGCTCCTCCCAGTACTTCgaggctcctcctcctctttggCTGTCCTCCCCCGCagacccctccccctctctctcatcctccGTCATATCCAGCTGTGCGTCTCTATCTGGACGCCACTGCTGCGGTCTGTGGACAAGCCAGGgctcaccctcctcctcctcttcctcctctcccaaCTGCTCTGCCCCAAAACTCCCTGCGCTTTCTCCCAGCCTGTGTGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77199 lncRNA upstream 531 13348855 ~ 13349146 (+) True G61674
TU77197 lncRNA upstream 5638 13343757 ~ 13344039 (+) True G61672
TU77196 lncRNA upstream 6296 13343143 ~ 13343381 (+) True G61671
TU77195 lncRNA upstream 6664 13342680 ~ 13343013 (+) True G61670
TU77194 lncRNA upstream 7978 13341479 ~ 13341699 (+) True G61669
TU77201 lncRNA downstream 536 13351248 ~ 13351534 (+) True G61676
TU77328 lncRNA downstream 244802 13595514 ~ 13596726 (+) True G61774
TU77411 lncRNA downstream 358123 13708835 ~ 13709496 (+) True G61841
TU77450 lncRNA downstream 400375 13751087 ~ 13751363 (+) True G61871
TU77473 lncRNA downstream 439050 13789762 ~ 13792944 (+) True AMCG00020245
AMCG00020213 mRNA upstream 19500 13303410 ~ 13330177 (+) True AMCG00020213
AMCG00020206 mRNA upstream 94386 13248757 ~ 13255291 (+) True AMCG00020206
AMCG00020192 mRNA upstream 534345 12802058 ~ 12815332 (+) True AMCG00020192
AMCG00020191 mRNA upstream 614464 12734875 ~ 12735213 (+) True AMCG00020191
AMCG00020187 mRNA upstream 659332 12664908 ~ 12690345 (+) True AMCG00020187
AMCG00020218 mRNA downstream 86030 13436742 ~ 13451791 (+) True AMCG00020218
AMCG00020217 mRNA downstream 105967 13456679 ~ 13461481 (+) True AMCG00020217
AMCG00020225 mRNA downstream 162842 13513554 ~ 13516767 (+) True AMCG00020225
AMCG00020223 mRNA downstream 194699 13545411 ~ 13579175 (+) True AMCG00020223
AMCG00020222 mRNA downstream 232569 13583281 ~ 13585950 (+) True AMCG00020222
TU76948 other upstream 729860 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 811925 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 811925 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 3561625 9784117 ~ 9788052 (+) True AMCG00020105
TU75390 other upstream 7163593 6182712 ~ 6186084 (+) False AMCG00020000
TU77491 other downstream 482458 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 512765 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 597714 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 1117088 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 3463662 16814374 ~ 16815857 (+) True G62632

Expression Profile