RNA id: TU77227


Basic Information

Item Value
RNA id TU77227
length 1086
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G61696
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13337016 ~ 13338101 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTCTGCTCTCAGGGATTCAAAAAAATCAAATGGATGGCCTTTCCCCAGGCCTGAGAAAGCAGAGCCTTCCGCTCCCCTCGCTGGCTCAGACCAGGGTTGACTCCCCAGCAGGTGTAGGGGTGGGGTCCAGCCAGGTGCAGCCCCTCCCTCCATTCTCTCTACCTCAGTCATTACGGGTTCGTTCTCTAGGCTCTGGCCCCCGTAAAGACCAGGCAGGTGTTTAAATGCAcaccttttcatgttttcaagcgtgttttatttaattgtctgcttaataataatactactactaataataaatgtaatctacAGTCTGAGCTTGGCCAGTTTGCTGCTCCTGATGCCTGTTGacaaatatgtttgtttcttttgttttctgaatttttGTAATGGACGTACAGTGGAAATTCTTCAGAACCCCTgtcccacccccctccccttcccatTGGCTAAATTTAACTCGTAGCCAATCATAATCGAGCTCTGGACGGATTTCCCTGCAGCTCTTCTGCGTAAACTCTGTGGATCCTTTCTCTCCATTgtcttaataatttatttgttttcggTTGTGTTGTTAGtaacattgtttgttttctctacaCAAGGCCACTTGCCTTTGGGCTGGAggtagttttttgtgtgtgaaggtATAATTGGGAAGTTCTTTGCATTAGGCTGGTGTGTTTGCAGTCAGCCTGACCGAGCTGTTCAATAGCCATTCCAGAGACTCTGTGCACTTTAGTCTTTCCTGCATTGTGCCCATGGACACCCTTCCCTGGTGAACTGCTGCTGCACAGATGTAATGTGaagatttaattaacaaaagttttttgttttttgttttttacatctgTGTGACCAGTGaccatttacaatatatttttctgctaATGAAAGCAATAACAAGCAACAGCACTGAACTCTTTTTTTAatagctttttgtgttttttaacagtatttttctAATTGTAGTTCCTTGTTGTTCACATATTTTTATGGGAGTCTTAAGTGTGTGTCCCTGTAGCGTTTCTACTTTTTTTAATCGTGTAAAGAATGAGGCAAGAGATCATATTTTGTACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77095 lncRNA downstream 329350 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 531583 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 593579 12719367 ~ 12743437 (-) True G61550
TU76944 lncRNA downstream 753268 12578671 ~ 12583748 (-) True G61488
TU76926 lncRNA downstream 837590 12493801 ~ 12499426 (-) True G61477
TU77271 lncRNA upstream 108901 13447002 ~ 13450062 (-) True G61729
TU77364 lncRNA upstream 240308 13578409 ~ 13653379 (-) True G61803
TU77451 lncRNA upstream 412983 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 451290 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 473870 13811971 ~ 13813003 (-) False AMCG00020256
AMCG00020207 mRNA downstream 63620 13255533 ~ 13273396 (-) True AMCG00020207
AMCG00020211 mRNA downstream 89388 13237915 ~ 13247628 (-) True AMCG00020211
AMCG00020209 mRNA downstream 101620 13230008 ~ 13235396 (-) True AMCG00020209
AMCG00020212 mRNA downstream 112504 13216996 ~ 13224512 (-) False AMCG00020212
AMCG00020208 mRNA downstream 132027 13199720 ~ 13204989 (-) True AMCG00020208
AMCG00020214 mRNA upstream 452 13338553 ~ 13343605 (-) True AMCG00020214
AMCG00020215 mRNA upstream 6127 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020216 mRNA upstream 30547 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020221 mRNA upstream 62013 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020219 mRNA upstream 70604 13408705 ~ 13427411 (-) True AMCG00020219
TU77151 other downstream 112506 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 338793 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 827079 12500424 ~ 12509937 (-) False AMCG00020180
TU76916 other downstream 840276 12490698 ~ 12496740 (-) False AMCG00020180
TU77373 other upstream 257417 13595518 ~ 13596917 (-) True AMCG00020230
TU77394 other upstream 325986 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 466919 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 466919 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 791577 14129678 ~ 14131569 (-) True G62011

Expression Profile