RNA id: TU77364


Basic Information

Item Value
RNA id TU77364
length 1758
lncRNA type read_through
GC content 0.45
exon number 2
gene id G61803
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13578409 ~ 13653379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatgtaaaaaTTCATAGGGATCTCACATTTCTAGCACATGCTAAATATGTCAATTTGATCTGTATGGGAAACTGCAGCCTAACACTACACTGCCACAGCAGCGGGGACACAAGGCCGCTGAAACCAACATGactcaaaagaaaaaattaaagctCTAGTAGTTGAATGAGAATATGTTTATAGCAGAGACTGCAGCACATCTTATACACACCAGCTGTGACAACCAAGCACCAGAGCTGACCGACTGAGCATTGATATGCACACGTGTGTGTATGcctgtgggtgggtgtgtgtacACAGCCTGTCTGTAGCGGGTTTCTCTGGACACGACTGGATCAGAGGAGTGTCTGTGGTCAATAAGTTACTGGAGCGACTGAGGGAGATATGGatagagaaagagggaggagagtgtgagagacagggagagggatggagagagtgtgagagggGAGGAGAGTGATGAAGGGGCACTAAACACCGCTCCAGTAACCTGTGGCACCTGTGCTGCAGCGCATCTCTGTCTCCAGCAACCCAGGGAAGTCCATCAGAAAAACAGGCTACACACTGGGAGCGGCCGGATGGTGCAGCGGGGGCGTAGCACAGTGCTCAGTTGTCACAGCTTGTCTATATACAGTTTACAGGTGTACTGTTAGGTAACcgcagatagatagatagatagatagatagatagatagatagatagatagataaataaataaatagaacacAAATCAGGTGCAGCTCGGTCTGGGTCCGACTAGAAACACGAAGGGGATCCAAAAGGCCAGTCAAAGGTTCAGAGTTTGAACATTTGAGGGTCATTCAAAGGTCATCCCAAGGGTCAAAGGTTGAAGTTCACGACCCCGTAGGGTCAAAGTTCACTGCAATCCAAAGATGACAGTTTGTGTGTTGCTTTGTCATCCccatcccctccccctccccctccccctccctcgcCGCCTCCAATGCACAGGTGAAAGTTTAAAGTTCGCGGCaatccaaaaagaaaatgtgagtgTCACGGGTTAAAGGTACAAGGTcatgctgatttattttttccctgtaaGGGAGGGGGGTCAAGGGTAATAGGTCACTCAGTCCCAGGCAGACATGGCTGCTCTGATGTTTCCCATTATGTACAgctaaattgtttatttttttgtttgtttgtattttattattatttttttacaaatttatACCTTTTACAATGAAAATAGAAATCCAAGATGCCGTTAAAATGTCCCCCCCCCGTCCCCTACATTCTTTGTtcctttatattaaacaatgtatcattttaattttcattcagtgatttacatttacattttcccttttggtgaaacacaatcatttacagttaaaagtcagagagagtcagagagagagggagagagagagcagagtgTCAGTCTGCCCGTCACTGTTAGTCTGCAGTGATGTCACAGACTTGGGCTCCGGGGTCCTAGATCAGAGAGCATTCCACTCCACAAACATCACCTGACCCAccaaacacattcatacacacactgtcGCACACACATTATCGTAAACGCagtctcacagacacacacactttctgcTTCTCTTcttctatccctctctctctcctcttccccctctactctctttctctccattcaacacagtgtgtctgtgttgaatGACAGCTGGGcctggggaaagaaaaaaagggagggagagatagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77271 lncRNA downstream 128347 13447002 ~ 13450062 (-) True G61729
TU77227 lncRNA downstream 240308 13337016 ~ 13338101 (-) True G61696
TU77095 lncRNA downstream 570743 13007422 ~ 13007666 (-) True G61593
TU77034 lncRNA downstream 772976 12804670 ~ 12805433 (-) True G61558
TU77020 lncRNA downstream 834972 12719367 ~ 12743437 (-) True G61550
TU77451 lncRNA upstream 97705 13751084 ~ 13751298 (-) True G61872
TU77532 lncRNA upstream 136012 13789391 ~ 13792931 (-) True G61920
TU77540 lncRNA upstream 158592 13811971 ~ 13813003 (-) False AMCG00020256
TU77542 lncRNA upstream 158592 13811971 ~ 13813003 (-) False AMCG00020256
TU77549 lncRNA upstream 168369 13821748 ~ 13823540 (-) True G61927
AMCG00020220 mRNA downstream 107553 13469810 ~ 13470856 (-) True AMCG00020220
AMCG00020219 mRNA downstream 150998 13408705 ~ 13427411 (-) True AMCG00020219
AMCG00020221 mRNA downstream 175169 13400114 ~ 13403240 (-) True AMCG00020221
AMCG00020216 mRNA downstream 190412 13368648 ~ 13387997 (-) True AMCG00020216
AMCG00020215 mRNA downstream 226740 13344228 ~ 13351669 (-) True AMCG00020215
AMCG00020229 mRNA upstream 10697 13664076 ~ 13665592 (-) True AMCG00020229
AMCG00020237 mRNA upstream 18916 13672295 ~ 13684406 (-) True AMCG00020237
AMCG00020236 mRNA upstream 37548 13690927 ~ 13702190 (-) True AMCG00020236
AMCG00020235 mRNA upstream 55437 13708816 ~ 13710669 (-) True AMCG00020235
AMCG00020240 mRNA upstream 58403 13711782 ~ 13715191 (-) True AMCG00020240
TU77151 other downstream 353899 13221600 ~ 13224510 (-) True AMCG00020212
TU77089 other downstream 580186 12997838 ~ 12998223 (-) True G61589
TU76920 other downstream 1068472 12500424 ~ 12509937 (-) False AMCG00020180
TU76923 other downstream 1081669 12490698 ~ 12496740 (-) False AMCG00020180
TU76917 other downstream 1085844 12490698 ~ 12492565 (-) False AMCG00020180
TU77394 other upstream 10708 13664087 ~ 13665585 (-) False AMCG00020229
TU77536 other upstream 151641 13805020 ~ 13808333 (-) True AMCG00020252
TU77538 other upstream 151641 13805020 ~ 13808333 (-) False AMCG00020252
TU77648 other upstream 476299 14129678 ~ 14131569 (-) True G62011
TU77709 other upstream 677143 14330522 ~ 14332407 (-) True G62061

Expression Profile