RNA id: TU77411



Basic Information


Item Value
RNA id TU77411
length 641
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G61841
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13708835 ~ 13709496 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATAtccatacacacaaaacaaccaaaTACAACAGAAAGTGATCACTTTATTACAAACACTTGTAAACCCCTCAGCTGAAAAACCACAGCTGCCTAAAATGGAAAAGTGGCTGTATGGAGTGGATGGGGGGGCAAGGGGCAAGGGGCAAGGAGCAAGAAGGAGGAATTGGCAGTGCCCCCACCTACCCTTTGCTAGCTCATTGCAGCCGCACAGAGAAACATGCAGAATCGATGACCTCACTTTATGGCTGTGACATCACAAAGCCCTCCTCTGCCAGTGTTCTACAGCACACCTCACTACACTATTGATCCCTTCAATATTGACCatggaattaataataattctgatgCAAACAAAACTATTACTACTAGCTCTTATAAtcaattgttaaattaataaaatcaccccacattatatatacagatatctctctctctccctgcagtgtCTCTCCACTCTGTCACTGTGGCAGAGCCCCAGCCTCCCATCCCTGCACACCACATTAGTTACACAGGATCTGCAATCATTGGGCCAGCAAGGGCCTAAGGGAGTATAGAGAGTATTGTTAATCCATCGCATCGCCATAGCGCGTGGTCTTCGGCCCAGCTTCCACAGAGGGGGCGGCTGGGAGGGGCTCCTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77328 lncRNA upstream 112109 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 357301 13351248 ~ 13351534 (+) True G61676
TU77199 lncRNA upstream 359689 13348855 ~ 13349146 (+) True G61674
TU77197 lncRNA upstream 364796 13343757 ~ 13344039 (+) True G61672
TU77196 lncRNA upstream 365454 13343143 ~ 13343381 (+) True G61671
TU77450 lncRNA downstream 41591 13751087 ~ 13751363 (+) True G61871
TU77473 lncRNA downstream 80266 13789762 ~ 13792944 (+) True AMCG00020245
TU77505 lncRNA downstream 167815 13877311 ~ 13930740 (+) True G61904
TU77507 lncRNA downstream 173329 13882825 ~ 13885116 (+) True AMCG00020241
TU77495 lncRNA downstream 178655 13888151 ~ 13890428 (+) True G61895
AMCG00020227 mRNA upstream 68907 13625863 ~ 13639928 (+) True AMCG00020227
AMCG00020228 mRNA upstream 95457 13597969 ~ 13613378 (+) True AMCG00020228
AMCG00020226 mRNA upstream 113384 13592096 ~ 13595451 (+) True AMCG00020226
AMCG00020222 mRNA upstream 122885 13583281 ~ 13585950 (+) True AMCG00020222
AMCG00020223 mRNA upstream 129660 13545411 ~ 13579175 (+) True AMCG00020223
AMCG00020232 mRNA downstream 23144 13732640 ~ 13736452 (+) True AMCG00020232
AMCG00020247 mRNA downstream 45439 13754935 ~ 13759675 (+) True AMCG00020247
AMCG00020245 mRNA downstream 77518 13787014 ~ 13789985 (+) False AMCG00020245
AMCG00020242 mRNA downstream 112265 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020243 mRNA downstream 130057 13839553 ~ 13846985 (+) True AMCG00020243
TU77200 other upstream 358123 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1089018 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1171083 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 1171083 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 3920783 9784117 ~ 9788052 (+) True AMCG00020105
TU77491 other downstream 123674 13833170 ~ 13834832 (+) True G61894
TU77503 other downstream 153981 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 238930 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 758304 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 3104878 16814374 ~ 16815857 (+) True G62632

Expression Profile