RNA id: TU77491


Basic Information

Item Value
RNA id TU77491
length 1663
RNA type TUCP
GC content 0.67
exon number 1
gene id G61894
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13833170 ~ 13834832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCGCAGGTTGGCGAGGGCACGCGCCTGGATGTCACCAGGGGGCAGGGCTGACAGGTCGGGCAGCGGAGAGGGCAGGATCTGGAAGGATGGGGAATGAGCCCCCTGGGGTGGGGGCATGCTGGCACTgcgggggggggcaggggctcGGCTGGCACTGCGTTGGGGGGGGGATTCGGCTTGGACACTCTCCACAGGCTCTGGAGCGGTGGGCACTGTGGCGGCCGCAGGCATGTCCATGGCAATGCCCTCTTCCTTCTCCCAGGGGAGCCTCTCCCGCTGGGCCCCCACCCCATTGGGCAGCCACTTCTCACCCCCATAGTCTCGGTCCCGGTGGGGGCCTATGCGAACCCCATCCTCAAAGCGCCGGCGGTAGGAAGACACTGAGCTCGAGGTCCCCCTGTCCTGGTCTGGGGGGGTCTCAATGGAAGACTGAGGGGATGGAGGCAGCACAGGGGCGGCCGGGCTAGGCCACTCGGGGCTGAGGGGGGGGGGCGAGGTGGGTGTCTTTGGCACCGGGTCTGGCGGGGGGGTGCGGGGCTGGACCGGGCTGGGTTCCACCTCCAGCAGCAGGTTCTCAGTGCTGCGGGACTTGGGCTGCAGTTTGCCATAGTTGCGGTCGAACTTCTGCAGCATGCGACTGACGCGTCCCGTCTCCcagccctcctcctcctgcccgGTCCGGCCCAGCGTGCTCAGGTTCTCCTCGCTGCGGCTCAGCGCAGAGTCGTAGATCACCACCTCCCTGGCGCGGATCTCTGTCACGTTGCTCCCCCGGCGATCCAGCAGGTCGCTCAGCGAGCTGTAACTGCTCACTGTGCCGTTCTGCTGTAGCCGGGGCCCGGCCGCTGCCTTGCCCCCGCCTGGCTCTTGGAAGTAGTCTGGATCTGActcgatgatgatgatgttgtcGGCCCGGATAGTCTTGATCCCCGGCACGTTGCCATACAGCTCCAGGATGTGCTGGACGGGCCTGGTGGCGCTGTCCTTGTCCTGCCGCCGTCTTCGCTCCTTCTCCAGCTTGATGAAGGGGTTCTCGTCCAGCGGGCCCAGGCTGTCCTTCAGGACAAGGCTCTCCTGCCCCACGGCCGTGCCGCAGGTGTCGGTGGCTGCCGGGGCGTGGAGGCTCagctctttgtttgttttcaccgGTGACAGATCCGGGGAGCCGCCACTGCGCCGAGTTCCGAAGTGCTGGCTGGCCGTGGTCACAGAGAAATTCCTGCCGGCGCTGGAGGCAGAGTCCTTACCGTCGCTGTCCTTCCCTCCGCCCGCCGGCAGCTCGCCGTTGGTCCGGACGCTCCCAGGGCTGGGCTCGGCTGCACCTGCTCCCCCGCTCTTCGCCTTCCTCCTTTCCAGGATCTCCCTCTTCCAGGCCGGCATCCTGGCTCCGGGCCCCGGATTGTCCGGGCCGGCCTCCCGGCGGAGGACCCGCACTTCGCTGCCTGAcatggaggggagggggggctctCCGGGCACTCGAACGGCCTGTTCCCGAGCTGGGAGCTGGGGGGTTTCAATCCGCTTTCTCGGTCGCTGTACCTGCAGCGCTCAACACCATACACGCATCCCCCCTCCGTCcgtccgtctctctccctctttctttctctccctctcctctcggTCTGTCTCTGCCCGTGCTGCGGAAGCCCCGCCCCCTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77473 lncRNA upstream 40226 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 81807 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 123674 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 236444 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 481636 13351248 ~ 13351534 (+) True G61676
TU77505 lncRNA downstream 42479 13877311 ~ 13930740 (+) True G61904
TU77507 lncRNA downstream 47993 13882825 ~ 13885116 (+) True AMCG00020241
TU77495 lncRNA downstream 53319 13888151 ~ 13890428 (+) True G61895
TU77649 lncRNA downstream 300466 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 301588 14136420 ~ 14136936 (+) True G62013
AMCG00020242 mRNA upstream 8962 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020245 mRNA upstream 43185 13787014 ~ 13789985 (+) False AMCG00020245
AMCG00020247 mRNA upstream 73495 13754935 ~ 13759675 (+) True AMCG00020247
AMCG00020232 mRNA upstream 96718 13732640 ~ 13736452 (+) True AMCG00020232
AMCG00020227 mRNA upstream 193242 13625863 ~ 13639928 (+) True AMCG00020227
AMCG00020243 mRNA downstream 4721 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020255 mRNA downstream 29184 13864016 ~ 13872645 (+) False AMCG00020255
AMCG00020244 mRNA downstream 38949 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020246 mRNA downstream 40809 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020241 mRNA downstream 49256 13884088 ~ 13884605 (+) False AMCG00020241
TU77200 other upstream 482458 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1213353 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1295418 12519764 ~ 12537752 (+) True AMCG00020177
TU76877 other upstream 1295418 12535538 ~ 12537752 (+) False AMCG00020177
TU76237 other upstream 4045118 9784117 ~ 9788052 (+) True AMCG00020105
TU77503 other downstream 28645 13863477 ~ 13866563 (+) True AMCG00020255
TU77582 other downstream 113594 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 632968 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2979542 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3624328 17459160 ~ 17471869 (+) True AMCG00020371

Expression Profile