RNA id: TU77505



Basic Information


Item Value
RNA id TU77505
length 835
lncRNA type read_through
GC content 0.48
exon number 2
gene id G61904
representative True

Chromosome Information


Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13877311 ~ 13930740 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cacacacacgcaaaaaaTCTGGATTcatttgtaaaaatgaaaaatcagaGAATATACTTTATTTGACAAAGTATCACCCAGGACACGTCTCACTATCGACACGAATCCGTGCTTCTCACACGGCATGTTCTTTCTGAGAATTTTGtataccttttatttattttttttaatgacctgaaataaaataaaaataaaaacctttgacaAATGTGCAGCTGGTCTGGTGCAAGTCCAGTGTGGGTCCTAAGTGGCACAACAGGATGGCCGTCTCAGCCAGTCAGGGAAACTGCACTGGCCGCCAGAAATTCAGCTGAAATTCCACATCTCCACAGGAGGGTGCTGTTGCATCACTAATTACTCTGGTCCATTTACAGGCTTCTGTAGCTCTTGACTGTGTCTGGTGAATTAATGACTAATACAGAGGGTGGCGTTCGGGGGAGTTGTTGGCCTTgtcctagagagagagagattcccCAGCAGGATCCCTAGGGCACcacaaatctgttttaaaaagacTAGGACCAAATGCCTTGTGATCAGTTCAGTAATTAACGCTTTAAAAATTCTGCAATTTAGAGACAAGGGAGAGACTGTGGTTGCACGGCGAATAGGTAGTGCAGCCGGGACTGTAAGAGTCTGTTCGTGGTTGTGGGGGTGTGTGGTGGTCACGGGGGAGGGGGTCACACCCCCTTACTCGGACATCCACAGCTTGAAGGTGCGGTCGTAGGAGCAGGTGGCAATGAGCTGGCCATCTGGTGCCACATCCAGCCCCATCACCTTGCCCTCGTGTCCTGCCAGCGTCTTCAGTGGTGACCAGCCCGGGTGAGGGGGTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU77473 lncRNA upstream 84367 13789762 ~ 13792944 (+) True AMCG00020245
TU77450 lncRNA upstream 125948 13751087 ~ 13751363 (+) True G61871
TU77411 lncRNA upstream 167815 13708835 ~ 13709496 (+) True G61841
TU77328 lncRNA upstream 280585 13595514 ~ 13596726 (+) True G61774
TU77201 lncRNA upstream 525777 13351248 ~ 13351534 (+) True G61676
TU77649 lncRNA downstream 204558 14135298 ~ 14136287 (+) True G62012
TU77650 lncRNA downstream 205680 14136420 ~ 14136936 (+) True G62013
TU77651 lncRNA downstream 206686 14137426 ~ 14137829 (+) True G62014
TU77670 lncRNA downstream 265044 14195784 ~ 14218381 (+) False AMCG00020273
TU77683 lncRNA downstream 311125 14241865 ~ 14288834 (+) True G62039
AMCG00020246 mRNA upstream 85 13875641 ~ 13877226 (+) True AMCG00020246
AMCG00020244 mRNA upstream 3012 13873781 ~ 13874299 (+) True AMCG00020244
AMCG00020255 mRNA upstream 4666 13864016 ~ 13872645 (+) False AMCG00020255
AMCG00020243 mRNA upstream 30326 13839553 ~ 13846985 (+) True AMCG00020243
AMCG00020242 mRNA upstream 53103 13821761 ~ 13824208 (+) True AMCG00020242
AMCG00020267 mRNA downstream 18902 13949642 ~ 13949983 (+) False AMCG00020267
AMCG00020265 mRNA downstream 23747 13954487 ~ 13956067 (+) True AMCG00020265
AMCG00020262 mRNA downstream 42674 13973414 ~ 13975559 (+) True AMCG00020262
AMCG00020264 mRNA downstream 57340 13988080 ~ 13995139 (+) True AMCG00020264
AMCG00020263 mRNA downstream 69487 14000227 ~ 14022327 (+) True AMCG00020263
TU77503 other upstream 10748 13863477 ~ 13866563 (+) True AMCG00020255
TU77491 other upstream 42479 13833170 ~ 13834832 (+) True G61894
TU77200 other upstream 526599 13349677 ~ 13350712 (+) True G61675
TU76948 other upstream 1257494 12615792 ~ 12619817 (+) True G61491
TU76875 other upstream 1339559 12519764 ~ 12537752 (+) True AMCG00020177
TU77582 other downstream 17686 13948426 ~ 13951047 (+) True AMCG00020267
TU77751 other downstream 537060 14467800 ~ 14469300 (+) True AMCG00020281
TU78405 other downstream 2883634 16814374 ~ 16815857 (+) True G62632
TU78611 other downstream 3528420 17459160 ~ 17471869 (+) True AMCG00020371
TU78735 other downstream 3997588 17928328 ~ 17928904 (+) True G62895

Expression Profile